Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst26234487g00226 ATGCATATTACAGGGGAGAGAGGTTTTGAGACCCAATTTTGCATTCTCGAATTCGAAATCCATCTTGAGAGAGTTTCTCGCCTCGGGGGGCTATTGGCTCGGCAAGAAATGGATCCTGGTCGCTATGGTCTTCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGTTATGGTGCGGTCCATGAGCCAAATTATCGGGTTGGGGGTGCTTATGAGGATAGACGCTTTGTAGATGAAAGATATCCAAGGGATGCCATATACCAGAGAAATGCTTTCCATCGTGACATTTTGGATAGGGAGGGCTATATGCCACCAGGACCTCCTGTTGGCCACTGGAATCAATCCAAAAGGAGAGGTTATGAGGAAGATTATCCAATGGACAGAGAATCTAGACGTTTTCAGAGGCCTTATCATGAGCCGTATAATCAGATTGATGCCTACAGAGAAGCCGATATTGACACGTTCCCAGAATATGATAAGTTTCGAGATGGTTATGGCAGCATTGAAAATTATGGGGATCGAGGATATGATAAACCTGCCAGGTTTGGAGGACATGACCGTGATGATTATGCATATGATGACTATGGCTACAAGTCCCGTGCTTCTCATCATCGTAGGGAGGATAGCCATGAGAGGGATTATGATCATGGCCGCCATAGTTATGATTCTGATTATGAAAGAGGCAGTAGAAGAGATAGTAACTGGAGGCGACGTGGATCACGTGATCGAGAACATGATAGAAGAGGTCTTAGTCGGGAAAGAGATGTAAGCCCGCGTAAGAGGCGTGAGCATTCTCATTCTAGGTCCCGGTCCCGTTCCCGGTCCCGGTCCAAATCTCAGTCCCATTCCCAATCCCGTTCCCAGTCTCGTGGATACGACGATCATCCAAGATCAAGGTCCCCTCGAGGTCGAAGCCATAGTCGGAGTTATAGAGAAGATAGCTATAGTGACAGTCGATACGATAGAAGTGAAAGACGCAGGGATCGTGAGGAAAAACGTCAGCGTGAACATTATTCAGTGGCCCCATCTGCAACTATTGTTGTGAAAGGTCTCTCACAGAAAACTACTGAGGAGGATCTGTACCAAATACTTGCGGAGTGGGGACCCCTTCGTCATGTTCGTGTTATAAAGGAAAGAAATTCTGGCATTTCTCGGGGATTTGCATTTATCGATTTTCCTTCTGTGGGAGCCGCACAAGCAATGATGGACAAGCTAGGAGATGATGGTCTTGTTGTGGATGGCAGAAAGCTTTTCTTTGAATATAGTAGTAAACCTACTGGTGGTCCAGGTCCTGATGGAGCTATGAAATCAGGCCATAATCATAAGAGCATTACAATACCATCTGATTGGATGTGCACTATATGTGGCTACATCAATTTTGCACGTCGTACCTCCTGTTATCAGTGTAATGAGCCACGAACTGAGGATGCTCCTGCAGCAGATATTTCATTAACAAATTCATCAGCCATGGGGAAGAAGGGTCTGGAGGCAGGTCCAACTCATGTTTTGGTTGTTCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCTAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACACATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAGGATGCTACCAAAGCTCTTGAGGCAACAAATGGGACTACTCTTGAGAAGAATGGACAAATTCTAAGAGTGGCATATGCTAAAAGTATCTTGGGCCCTGGATCAGGAGCACCAGGAACTTCACAATCAAGCAGCCTTGCAGCAGCTGCTATTGAGGCTGCGACATTTGCTCAACAGTATGATTCTGTGGGGTGGGCTCCAAAAGAATACAATCCCGATGATAAGCAAGCTACTGCTCCTGAGCAAAGCACCACAGGTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCCGGTTATTATTATGATGCAGCATCTGGGTTTTACTACGATGGAAATACTGGTCTTTACTACGATGGTAACAATGGGATATGGTATACGTATGACCACCAAACTCAACAGTACATCCCTTGCACTGAACAAAATCAAAACAACACAGCTAATCAGCAGTCTGAACCTTCCAAGGCATCTGATGGTGCCAGTAGTAAAAAGGTGGTAATTTCTGCACCGGCTTCTACTGTTGCATCAGTTGAGAAGCCTGCATCATTGGCAGATGCTGTGCAGGCTGCTGCAACGGCTGCTTTAGCTGCTGAGAAGAAAGAAAAAGAGAAGGCAAAGGAGATAAAACTTGCCTCAAAAAGCAGTATTCTAGCAAACAAGAAAAAAATGAACAATGTGTTGTCAATGTGGAAGCAGAGGAGCCATGAAGGGCAGGCTACTCGAGTAGCCTTGGAGGACAATCAACTCTCTGTTTCCACCGATGATAGGTCATACCCTACAAAGAACAAGTTAAAAGGTGAATCTATGCCTAGGGAAACCAACGTATCTAGCTTGGGAACACATACAACTGTTATCCAGGCTGCTGGTTTGGACTCTCAGGCACAGGCACGGCCTGTTAGTAATAGTCTTGGTGGAACTATTATGGGAGTTATAAGGGGTTCAGGAAGAGGGGTTGTCAAATCAGATAGCTACCCTGGTTCTACAGCTTCTCCGTCATCATTTTCAAGTTCTTCAGCTGCAAGTGTCGATGCACAGATAAGTTCAACTCCTTTTAGAACAGATGTCTCTGCCTTGGGTTCATATACACCATCAGTGGCTGCCGGAAGTGGCAGAAGAAGGTTTTCAGAAGCGCCTAGTTCCGCTTCAATTCATAAGGAGCAACCTCAAACAACCTATAGAGATCGTGCAGCTGAGAGGAGAAGTTTGTATGGCTCATCATCATCGGGTGGGAATGATTTGGCTGATTATGAAATTGGGGATTCAAATCGAGATTTTGTGTCGAGGAAGGGTGATCCTATGCCTTTTCCTCCTGGGGTTGGTGGAGGACGTGCAGTTGGAGAAGTCAACCTTGATACTTTTGAGGTGATAACAGCAGAAAAAGCACTTGATGAAAACAATGTTGGCAATCGTATGCTTCGCAACATGGGATGGCAGGAAGGCTTGGGACTTGGAAAGGATGGGAGTGGAATGGTAGAGCCAGTGCAGGCACAAGCCATGGAGAATAGAGCAGGACTTGGAAGTCAGCAGAAGAAGTTAGATCCTAGCCTTGAGGTGCAGGCAGGGGACAGTTATAAGATGCTTATTCATAAAAAGGCACTTGCCAGGTTCCGGGAAATGAATGACAGTTAA 3288 0.4571 MHITGERGFETQFCILEFEIHLERVSRLGGLLARQEMDPGRYGLHQGWDNNSALEGYGAVHEPNYRVGGAYEDRRFVDERYPRDAIYQRNAFHRDILDREGYMPPGPPVGHWNQSKRRGYEEDYPMDRESRRFQRPYHEPYNQIDAYREADIDTFPEYDKFRDGYGSIENYGDRGYDKPARFGGHDRDDYAYDDYGYKSRASHHRREDSHERDYDHGRHSYDSDYERGSRRDSNWRRRGSRDREHDRRGLSRERDVSPRKRREHSHSRSRSRSRSRSKSQSHSQSRSQSRGYDDHPRSRSPRGRSHSRSYREDSYSDSRYDRSERRRDREEKRQREHYSVAPSATIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAAQAMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDGAMKSGHNHKSITIPSDWMCTICGYINFARRTSCYQCNEPRTEDAPAADISLTNSSAMGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGAPGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQATAPEQSTTGGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYTYDHQTQQYIPCTEQNQNNTANQQSEPSKASDGASSKKVVISAPASTVASVEKPASLADAVQAAATAALAAEKKEKEKAKEIKLASKSSILANKKKMNNVLSMWKQRSHEGQATRVALEDNQLSVSTDDRSYPTKNKLKGESMPRETNVSSLGTHTTVIQAAGLDSQAQARPVSNSLGGTIMGVIRGSGRGVVKSDSYPGSTASPSSFSSSSAASVDAQISSTPFRTDVSALGSYTPSVAAGSGRRRFSEAPSSASIHKEQPQTTYRDRAAERRSLYGSSSSGGNDLADYEIGDSNRDFVSRKGDPMPFPPGVGGGRAVGEVNLDTFEVITAEKALDENNVGNRMLRNMGWQEGLGLGKDGSGMVEPVQAQAMENRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMNDS 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst26234487g00226 1095 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 344 424 IPR000504 GO:0003723
Arst26234487g00226 1095 PANTHER RNA-BINDING PROTEIN 243 1090 - -
Arst26234487g00226 1095 Gene3D - 445 476 - -
Arst26234487g00226 1095 MobiDBLite consensus disorder prediction 200 338 - -
Arst26234487g00226 1095 SUPERFAMILY RNA-binding domain, RBD 499 585 IPR035979 GO:0003676
Arst26234487g00226 1095 SUPERFAMILY Ran binding protein zinc finger-like 441 476 IPR036443 -
Arst26234487g00226 1095 Gene3D - 308 444 IPR012677 -
Arst26234487g00226 1095 MobiDBLite consensus disorder prediction 288 338 - -
Arst26234487g00226 1095 MobiDBLite consensus disorder prediction 105 133 - -
Arst26234487g00226 1095 Pfam G-patch domain 1018 1059 IPR000467 GO:0003676
Arst26234487g00226 1095 MobiDBLite consensus disorder prediction 115 133 - -
Arst26234487g00226 1095 MobiDBLite consensus disorder prediction 263 279 - -
Arst26234487g00226 1095 ProSitePatterns Zinc finger RanBP2-type signature. 450 469 IPR001876 -
Arst26234487g00226 1095 MobiDBLite consensus disorder prediction 913 948 - -
Arst26234487g00226 1095 Gene3D - 482 606 IPR012677 -
Arst26234487g00226 1095 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 501 581 IPR000504 GO:0003723
Arst26234487g00226 1095 MobiDBLite consensus disorder prediction 874 892 - -
Arst26234487g00226 1095 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 503 569 IPR000504 GO:0003723
Arst26234487g00226 1095 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 346 406 IPR000504 GO:0003723
Arst26234487g00226 1095 ProSiteProfiles Zinc finger RanBP2 type profile. 446 475 IPR001876 -
Arst26234487g00226 1095 MobiDBLite consensus disorder prediction 697 711 - -
Arst26234487g00226 1095 MobiDBLite consensus disorder prediction 697 716 - -
Arst26234487g00226 1095 MobiDBLite consensus disorder prediction 200 262 - -
Arst26234487g00226 1095 MobiDBLite consensus disorder prediction 166 187 - -
Arst26234487g00226 1095 MobiDBLite consensus disorder prediction 628 642 - -
Arst26234487g00226 1095 ProSiteProfiles G-patch domain profile. 1017 1063 IPR000467 GO:0003676
Arst26234487g00226 1095 CDD OCRE_SUA_like 638 691 IPR035623 -
Arst26234487g00226 1095 MobiDBLite consensus disorder prediction 801 829 - -
Arst26234487g00226 1095 SMART rrm1_1 502 577 IPR000504 GO:0003723
Arst26234487g00226 1095 SMART rrm1_1 345 420 IPR000504 GO:0003723
Arst26234487g00226 1095 SMART G-patch_5 1015 1061 IPR000467 GO:0003676
Arst26234487g00226 1095 SUPERFAMILY RNA-binding domain, RBD 329 428 IPR035979 GO:0003676
Arst26234487g00226 1095 Pfam OCRE domain 642 690 IPR041591 -
Arst26234487g00226 1095 SMART zf_4 448 472 IPR001876 -
Arst26234487g00226 1095 MobiDBLite consensus disorder prediction 617 643 - -
Arst26234487g00226 1095 CDD RRM1_RRM2_RBM5_like 499 579 - -
Arst26234487g00226 1095 MobiDBLite consensus disorder prediction 871 892 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst26234487g00226 343 565 Eukaryotic Initiation Factors Gene Family AT2G36660 25.200 6.20e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst26234487g00226 K13094 - gmx:100787998 1638.24