Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst26234487g00225 ATGCATATTACAGGGGAGAGAGGTTTTGAGACCCAATTTTGCATTCTCGAATTCGAAATCCATCTTGAGAGAGTTTCTCGCCTCGGGGGGCTATTGGCTCGGCAAGAAATGGATCCTGGTCGCTATGGTCTTCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGTTATGGTGCGGTCCATGAGCCAAATTATCGGGTTGGGGGTGCTTATGAGGATAGACGCTTTGTAGATGAAAGATATCCAAGGGATGCCATATACCAGAGAAATGCTTTCCATCGTGACATTTTGGATAGGGAGGGCTATATGCCACCAGGACCTCCTGTTGGCCACTGGAATCAATCCAAAAGGAGAGGTTATGAGGAAGATTATCCAATGGACAGAGAATCTAGACGTTTTCAGAGGCCTTATCATGAGCCGTATAATCAGATTGATGCCTACAGAGAAGCCGATATTGACACGTTCCCAGAATATGATAAGTTTCGAGATGGTTATGGCAGCATTGAAAATTATGGGGATCGAGGATATGATAAACCTGCCAGGTTTGGAGGACATGACCGTGATGATTATGCATATGATGACTATGGCTACAAGTCCCGTGCTTCTCATCATCGTAGGGAGGATAGCCATGAGAGGGATTATGATCATGGCCGCCATAGTTATGATTCTGATTATGAAAGAGGCAGTAGAAGAGATAGTAACTGGAGGCGACGTGGATCACGTGATCGAGAACATGATAGAAGAGGTCTTAGTCGGGAAAGAGATGTAAGCCCGCGTAAGAGGCGTGAGCATTCTCATTCTAGGTCCCGGTCCCGTTCCCGGTCCCGGTCCAAATCTCAGTCCCATTCCCAATCCCGTTCCCAGTCTCGTGGATACGACGATCATCCAAGATCAAGGTCCCCTCGAGGTCGAAGCCATAGTCGGAGTTATAGAGAAGATAGCTATAGTGACAGTCGATACGATAGAAGTGAAAGACGCAGGGATCGTGAGGAAAAACGTCAGCGTGAACATTATTCAGTGGCCCCATCTGCAACTATTGTTGTGAAAGGTCTCTCACAGAAAACTACTGAGGAGGATCTGTACCAAATACTTGCGGAGTGGGGACCCCTTCGTCATGTTCGTGTTATAAAGGAAAGAAATTCTGGCATTTCTCGGGGATTTGCATTTATCGATTTTCCTTCTGTGGGAGCCGCACAAGCAATGATGGACAAGCTAGGAGATGATGGTCTTGTTGTGGATGGCAGAAAGCTTTTCTTTGAATATAGTAAACCTACTGGTGGTCCAGGTCCTGATGGAGCTATGAAATCAGGCCATAATCATAAGAGCATTACAATACCATCTGATTGGATGTGCACTATATGTGGCTACATCAATTTTGCACGTCGTACCTCCTGTTATCAGTGTAATGAGCCACGAACTGAGGATGCTCCTGCAGCAGATATTTCATTAACAAATTCATCAGCCATGGGGAAGAAGGGTCTGGAGGCAGGTCCAACTCATGTTTTGGTTGTTCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCTAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACACATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAGGATGCTACCAAAGCTCTTGAGGCAACAAATGGGACTACTCTTGAGAAGAATGGACAAATTCTAAGAGTGGCATATGCTAAAAGTATCTTGGGCCCTGGATCAGGAGCACCAGGAACTTCACAATCAAGCAGCCTTGCAGCAGCTGCTATTGAGGCTGCGACATTTGCTCAACAGTATGATTCTGTGGGGTGGGCTCCAAAAGAATACAATCCCGATGATAAGCAAGCTACTGCTCCTGAGCAAAGCACCACAGGTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCCGGTTATTATTATGATGCAGCATCTGGGTTTTACTACGATGGAAATACTGGTCTTTACTACGATGGTAACAATGGGATATGGTATACGTATGACCACCAAACTCAACAGTACATCCCTTGCACTGAACAAAATCAAAACAACACAGCTAATCAGCAGTCTGAACCTTCCAAGGCATCTGATGGTGCCAGTAGTAAAAAGGTGGTAATTTCTGCACCGGCTTCTACTGTTGCATCAGTTGAGAAGCCTGCATCATTGGCAGATGCTGTGCAGGCTGCTGCAACGGCTGCTTTAGCTGCTGAGAAGAAAGAAAAAGAGAAGGCAAAGGAGATAAAACTTGCCTCAAAAAGCAGTATTCTAGCAAACAAGAAAAAAATGAACAATGTGTTGTCAATGTGGAAGCAGAGGAGCCATGAAGGGCAGGCTACTCGAGTAGCCTTGGAGGACAATCAACTCTCTGTTTCCACCGATGATAGGTCATACCCTACAAAGAACAAGTTAAAAGGTGAATCTATGCCTAGGGAAACCAACGTATCTAGCTTGGGAACACATACAACTGTTATCCAGGCTGCTGGTTTGGACTCTCAGGCACAGGCACGGCCTGTTAGTAATAGTCTTGGTGGAACTATTATGGGAGTTATAAGGGGTTCAGGAAGAGGGGTTGTCAAATCAGATAGCTACCCTGGTTCTACAGCTTCTCCGTCATCATTTTCAAGTTCTTCAGCTGCAAGTGTCGATGCACAGATAAGTTCAACTCCTTTTAGAACAGATGTCTCTGCCTTGGGTTCATATACACCATCAGTGGCTGCCGGAAGTGGCAGAAGAAGGTTTTCAGAAGCGCCTAGTTCCGCTTCAATTCATAAGGAGCAACCTCAAACAACCTATAGAGATCGTGCAGCTGAGAGGAGAAGTTTGTATGGCTCATCATCATCGGGTGGGAATGATTTGGCTGATTATGAAATTGGGGATTCAAATCGAGATTTTGTGTCGAGGAAGGGTGATCCTATGCCTTTTCCTCCTGGGGTTGGTGGAGGACGTGCAGTTGGAGAAGTCAACCTTGATACTTTTGAGGTGATAACAGCAGAAAAAGCACTTGATGAAAACAATGTTGGCAATCGTATGCTTCGCAACATGGGATGGCAGGAAGGCTTGGGACTTGGAAAGGATGGGAGTGGAATGGTAGAGCCAGTGCAGGCACAAGCCATGGAGAATAGAGCAGGACTTGGAAGTCAGCAGAAGAAGTTAGATCCTAGCCTTGAGGTGCAGGCAGGGGACAGTTATAAGATGCTTATTCATAAAAAGGCACTTGCCAGGTTCCGGGAAATGAATGACAGTTAA 3285 0.4572 MHITGERGFETQFCILEFEIHLERVSRLGGLLARQEMDPGRYGLHQGWDNNSALEGYGAVHEPNYRVGGAYEDRRFVDERYPRDAIYQRNAFHRDILDREGYMPPGPPVGHWNQSKRRGYEEDYPMDRESRRFQRPYHEPYNQIDAYREADIDTFPEYDKFRDGYGSIENYGDRGYDKPARFGGHDRDDYAYDDYGYKSRASHHRREDSHERDYDHGRHSYDSDYERGSRRDSNWRRRGSRDREHDRRGLSRERDVSPRKRREHSHSRSRSRSRSRSKSQSHSQSRSQSRGYDDHPRSRSPRGRSHSRSYREDSYSDSRYDRSERRRDREEKRQREHYSVAPSATIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAAQAMMDKLGDDGLVVDGRKLFFEYSKPTGGPGPDGAMKSGHNHKSITIPSDWMCTICGYINFARRTSCYQCNEPRTEDAPAADISLTNSSAMGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGAPGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQATAPEQSTTGGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYTYDHQTQQYIPCTEQNQNNTANQQSEPSKASDGASSKKVVISAPASTVASVEKPASLADAVQAAATAALAAEKKEKEKAKEIKLASKSSILANKKKMNNVLSMWKQRSHEGQATRVALEDNQLSVSTDDRSYPTKNKLKGESMPRETNVSSLGTHTTVIQAAGLDSQAQARPVSNSLGGTIMGVIRGSGRGVVKSDSYPGSTASPSSFSSSSAASVDAQISSTPFRTDVSALGSYTPSVAAGSGRRRFSEAPSSASIHKEQPQTTYRDRAAERRSLYGSSSSGGNDLADYEIGDSNRDFVSRKGDPMPFPPGVGGGRAVGEVNLDTFEVITAEKALDENNVGNRMLRNMGWQEGLGLGKDGSGMVEPVQAQAMENRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMNDS 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst26234487g00225 1094 CDD OCRE_SUA_like 637 690 IPR035623 -
Arst26234487g00225 1094 MobiDBLite consensus disorder prediction 200 338 - -
Arst26234487g00225 1094 MobiDBLite consensus disorder prediction 800 828 - -
Arst26234487g00225 1094 MobiDBLite consensus disorder prediction 870 891 - -
Arst26234487g00225 1094 Pfam G-patch domain 1017 1058 IPR000467 GO:0003676
Arst26234487g00225 1094 SUPERFAMILY Ran binding protein zinc finger-like 440 475 IPR036443 -
Arst26234487g00225 1094 Pfam OCRE domain 641 689 IPR041591 -
Arst26234487g00225 1094 MobiDBLite consensus disorder prediction 288 338 - -
Arst26234487g00225 1094 MobiDBLite consensus disorder prediction 105 133 - -
Arst26234487g00225 1094 MobiDBLite consensus disorder prediction 627 641 - -
Arst26234487g00225 1094 ProSiteProfiles Zinc finger RanBP2 type profile. 445 474 IPR001876 -
Arst26234487g00225 1094 SMART G-patch_5 1014 1060 IPR000467 GO:0003676
Arst26234487g00225 1094 ProSiteProfiles G-patch domain profile. 1016 1062 IPR000467 GO:0003676
Arst26234487g00225 1094 CDD RRM1_RRM2_RBM5_like 498 578 - -
Arst26234487g00225 1094 SUPERFAMILY RNA-binding domain, RBD 498 584 IPR035979 GO:0003676
Arst26234487g00225 1094 MobiDBLite consensus disorder prediction 115 133 - -
Arst26234487g00225 1094 MobiDBLite consensus disorder prediction 263 279 - -
Arst26234487g00225 1094 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 500 580 IPR000504 GO:0003723
Arst26234487g00225 1094 PANTHER RNA-BINDING PROTEIN 243 1089 - -
Arst26234487g00225 1094 SUPERFAMILY RNA-binding domain, RBD 329 431 IPR035979 GO:0003676
Arst26234487g00225 1094 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 502 568 IPR000504 GO:0003723
Arst26234487g00225 1094 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 346 406 IPR000504 GO:0003723
Arst26234487g00225 1094 MobiDBLite consensus disorder prediction 616 642 - -
Arst26234487g00225 1094 MobiDBLite consensus disorder prediction 912 947 - -
Arst26234487g00225 1094 MobiDBLite consensus disorder prediction 200 262 - -
Arst26234487g00225 1094 MobiDBLite consensus disorder prediction 166 187 - -
Arst26234487g00225 1094 MobiDBLite consensus disorder prediction 873 891 - -
Arst26234487g00225 1094 Gene3D - 307 443 IPR012677 -
Arst26234487g00225 1094 Gene3D - 444 475 - -
Arst26234487g00225 1094 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 344 424 IPR000504 GO:0003723
Arst26234487g00225 1094 Gene3D - 481 605 IPR012677 -
Arst26234487g00225 1094 SMART zf_4 447 471 IPR001876 -
Arst26234487g00225 1094 ProSitePatterns Zinc finger RanBP2-type signature. 449 468 IPR001876 -
Arst26234487g00225 1094 MobiDBLite consensus disorder prediction 696 710 - -
Arst26234487g00225 1094 MobiDBLite consensus disorder prediction 696 715 - -
Arst26234487g00225 1094 SMART rrm1_1 501 576 IPR000504 GO:0003723
Arst26234487g00225 1094 SMART rrm1_1 345 420 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst26234487g00225 343 564 Eukaryotic Initiation Factors Gene Family AT2G36660 25.301 1.97e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst26234487g00225 K13094 - gmx:100787998 1632.08