LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst26234487g00007	ATGGATGAGAAAGCTAAGTCCTCAGATCATGTTGCTGTCATCATTGACCAGCACACTAACCATCCGAAACCCCCTTCCTCCTCCTCCGTGGACAACAAGCCCCCCAAACAACACCCCTTGAGGGTCAAAACCCTTAACCGTCTCAGCTTCTCGAAGCCCAAATCCAGAATCCTCGAGTACAATAACTACTATCCCCACCACCATCTCGGCAGAAAGCTATCAAGCATTTCCCAGGAGAACAACAACGACAATAATAATGAGGACGTGGACGAAGACGAAGAGGAAGAGGAGGAGTGGTGGGACGAAGAAGAAGAGATCGAGGAGGAGGGTGAGGGAGAGAGGAATAAGTTGCAGGAGAGGAGGAGGAGGAAGAAGGTGAGGTGGAGGGTAGTGGTGGAGTGGGTGGTGTTCCTGAGCATAGCAACATGCTTGGTTTGTTCGCTGGTAATAACGCGGATAAAGAAGATGCACATGGTGGGTTTGGAGATATGGAAGTGGTGCTTGATGGTGATGGTGACATTCAGCGGGAGGTTGGTGTCGGGGTGGGTGGTGGGGGTGACGGTGTTCGTGATAGAGAGGAACTTCATGCTGAGAGAGAAGGTGCTGTACTTCATATACGGGCTGAGGAAGAGCATAAGGAACTGCCTGTGGCTAGGGCTGGTGCTTCTTTCATACTGGAGCGTGGTGTTCGACGACGTGCAGAAGAAGAACCACAAGTTCCTGAACAAGGTGTTTCAGGCACTGGTCGCAGTGCTGGTTGGGGCCATCATATGGCTCGTCAAGATTGTTCTCGTGAAGATGCTGGCATCCTCTTTTCACGTGGCCACCTACTTCGACAGGATGAAGGAGAGCGTCTTCCATCACTACATCCTCGACACTCTCTCAGGTCCACCCATGGAGGACGCGGAGGAGATACTGCAGCAGCACCGCCAGCTCACGGGGGGCGGCTCAAAGTCGATGCCTGCCAGGAGTAGGTTGAATAAGCTAAAGGAGAAGCAGCAGCAGGAGAGGTTTGGGGGGTCCAGGAGGATTGACATGGAGAAGCTGAGGGAGCTGAGCATGGAGAGCACTGCCTCCGCCTGGAGCGTCAAGAGGCTCGTCAACTATGTTCGCTCCTCCGGCCTCTCCACCATCTCCAGGACCGTGGATGATTTCGCCACCGCCGAGTCTGAGATCAACAGTGAATGGGAAGCTAGAAACTGCGCTCAGCGGATTTTCAACAACGTCGCCAAACCTGCTGCCAAGTACATTGAAGAGGAGGATTTGATGAGATTTCTGAAGAGGGTTGAGATACATACTATATTCCCTCTCTTCGAAGGTGCCCTTGAAACAGGGAAGATCAGCAGATCATCATTTAGAAATTGGGTGATTCGAGCATACTACGAACGAAAGGCACTAGCACAATCACTGAATGATACAAAAACAGCAGTGCAGCAGCTTCACAAACTAGCAAGCGCGATAGTGAGTGTGATAATAATCATTGTGATCCTTCTGGTGATGGGAGTGGCTACGCTCAAGATCATATTCTTCTGCATGACGCAAATCGTGTTGATTGGGGTTGCCTTCCAAGGTACCTGCAAGACCGTCTTGGAGGCCATCATCTTCGTCTTTGTCATGCATCCTTTCGACATTGGAGACCGCTGCGTCATTGACGGTGTTCATATGATCGTGGAAGAGATGAATATCTTGTCAACAGTGTTTCTTAGATACGACAACGAGAAAATATACTACCCAAATGCAGTTCTGCTGAATAAGCCAATCAGCAATTTCTACAGGAGTCCAGAGATGTGGGACTCAATTGATTTCACCATTGATGCTTCTACTCCCATGGAGACTATCATTGCACTCAAGAAATCAATACAAATTTACATTGAGAGCAAGCCAAAGTATTGGAATCCAAAGCACAGTGTGATAGCAAAAGAAATACAGAATGTGGACAAGCTGAAGTTGTGCTTGTGTGTGCAACACACAATCAATCATCAGAACTATGGCGAAAGGAGCATTAGGATCACTGAGCTCCTCCTGGAACTCAAAAAGATCTTTGAGATCCATGCTGTCAAGTACAATCTCCTCCCTCAGGAGATCCACATTACCCAGATGAACATGGAAAATAATAATATTAATAATGGCAGACTTGTCTTTCAATCATGA	2151	0.4863	MDEKAKSSDHVAVIIDQHTNHPKPPSSSSVDNKPPKQHPLRVKTLNRLSFSKPKSRILEYNNYYPHHHLGRKLSSISQENNNDNNNEDVDEDEEEEEEWWDEEEEIEEEGEGERNKLQERRRRKKVRWRVVVEWVVFLSIATCLVCSLVITRIKKMHMVGLEIWKWCLMVMVTFSGRLVSGWVVGVTVFVIERNFMLREKVLYFIYGLRKSIRNCLWLGLVLLSYWSVVFDDVQKKNHKFLNKVFQALVAVLVGAIIWLVKIVLVKMLASSFHVATYFDRMKESVFHHYILDTLSGPPMEDAEEILQQHRQLTGGGSKSMPARSRLNKLKEKQQQERFGGSRRIDMEKLRELSMESTASAWSVKRLVNYVRSSGLSTISRTVDDFATAESEINSEWEARNCAQRIFNNVAKPAAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASAIVSVIIIIVILLVMGVATLKIIFFCMTQIVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVHMIVEEMNILSTVFLRYDNEKIYYPNAVLLNKPISNFYRSPEMWDSIDFTIDASTPMETIIALKKSIQIYIESKPKYWNPKHSVIAKEIQNVDKLKLCLCVQHTINHQNYGERSIRITELLLELKKIFEIHAVKYNLLPQEIHITQMNMENNNINNGRLVFQS	716

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst26234487g00007	716	SUPERFAMILY	Sm-like ribonucleoproteins	532	590	IPR010920	-
	Arst26234487g00007	716	MobiDBLite	consensus disorder prediction	75	117	-	-
	Arst26234487g00007	716	PIRSF	Memb_At2g17000	2	713	IPR016688	-
	Arst26234487g00007	716	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN 5	42	705	IPR016688	-
	Arst26234487g00007	716	MobiDBLite	consensus disorder prediction	1	48	-	-
	Arst26234487g00007	716	Gene3D	-	541	590	IPR023408	-
	Arst26234487g00007	716	MobiDBLite	consensus disorder prediction	20	34	-	-
	Arst26234487g00007	716	Pfam	Mechanosensitive ion channel	482	685	IPR006685	GO:0016020\|GO:0055085
	Arst26234487g00007	716	MobiDBLite	consensus disorder prediction	84	110	-	-
	Arst26234487g00007	716	MobiDBLite	consensus disorder prediction	312	332	-	-
	Arst26234487g00007	716	FunFam	Predicted mechanosensitive ion channel	541	590	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst26234487g00007	23	701	Mechanosensitive Ion Channel Family	AT5G12080	43.509	0.0	556

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst26234487g00007	K22048		-	gmx:100813521	1003.43