Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst26234348g00001 GCACTTCTTTCAGGAGGACAAAAGCAGCGAATAGCAATTGCAAGAGCCATCATAAAGAATCCGGTGATTCTTCTTCTTGATGAAGCAACCAGTGCTCTTGACTCTGAATCTGAATTACTTGTCCAAAATGCCCTTGATCATGCCTCATTGGGCAGGACTACATTGGTTGTTGCACACAAGCTATCAACTGTCCGAAATGCAGATGTCATAGCCGTTGTCAACGCCGGTTCCATCATCGAAATCGGCACGCACAACGAGCTCATAACCCATCCAAACGGCCACTATGCAAAGCTAGCAAAACTCCAAACACAACTCAGCTTTGATGATCAACAAGAAATATCCAATGCTGTTTCTTCTGCAGCAAGAAGCAGTGCTGGTAGAACCAGCACAGCAAGATCAACAAGCCCTGCAATTTTCCAAAAATCACCAATCCCTATTGATGATAACACCATAACCCCAGAATCATCTCTTGTTTCTCATCCTTCACCTTCTTTTCCAAGGCTTCTATCTCTGAATGCACCTGAATGGAAACAATGTTTAATTGGTACTTTTTCCGCAATAGCTTTCGGCTCAGTGCAGCCCATATATGCCTTAACAATTGGTGGCATGATTTCTGCATTTTTCGCCGAAAGCCATAGTGAAATGATTCACAGAATCAGGACTTACTCTTTGATTTTCACTTCTCTTTCTCTTGCTTCCATCACACTCAACCTCTTGCAGCACTACAATTTCGCATACATGGGAGCAAAATTAACTAAAAGGATACGGCAGAGAATGCTTGAGAATATCTTAACATTCGAAACGGCTTGGTTTGATGAAGAAAATAACTCCAGTGGAGCATTGTGCTCAAGGCTAAGCAATGAGGCTTCCATGGTTAAGTCCCTTGTCGCGGATCGCGTTTCATTGCTGGTTCAAACAGCTTCTGCTGTCAGCATTGCAATGATCATAGGACTCGCCGTGGCGTGGAAGCTCGCTCTTGGGATGATAGCAGTGCACCCACTCACAATCCTCTGCTTCTACACAAGAAAAGTTCTTCTCTCTACACTCTCATCAAAATTCATCAAGGCACAGAATCATAGCACACAGATTGCAGTTGAAGCAGTGTACAACCACAGAATTGTGACTTCATTTGGAAGCATACAAAAGGTTTTGACATTATTCGATGAAGCGCAGGAGGCGCCAAGGAAGGAGGCGAGGAAGAAGTCGTGGCTGGCCGGGATTGGAATGGGGTCTGCTCAATGCCTAACATTCATGACATGGGCTTTGGATTTCTGGTATGGAGGGACATTGGTGGAGAAGAAGGATATTTCTGCAGGGGATGTGTTTAAGACATTCTTTGTTTTGGTTAGCACTGGGAAGGTCATTGCTGAAGCTGGAAGCATGACTTCTGATCTTGCAAAGTCCTCAACTGCTGTCAAATCTGTTTTTGAGATTCTTGACAGGAAATCACTTATTCCCAAGGCTGGTGATTGCAACAATGGAAGAAAGTTGGAAAATATGAGTGGGAAGATAGAACTAAAGAACGTTGATTTCGCCTACCCAAGTAGGGCAGGGACACCGATATTGCGCAAGTTTTGCTTGGAGGTGAAGGCAGGGAAGAGTATTGGGTTAGTTGGGAAGAGTGGTTGTGGAAAATCAACAGTGATTGCATTGATCCAAAGATTCTATGATGTTGAGAGAGGGTTTGTGAAAATGGACAATGTGGACATAAGGGAACTAGATATTCAATGGTATAGGCAGCACACTGCACTTGTTAGCCAAGAACCTGTCATATATTCTGGCACTGTAAGGGATAACATCTTGTTTGGGAAGCAAGATGCAACTGAGAATGAAGTTGTTGAGGCTGCAAAAGCCGCAAATGCTCATGAGTTCATATCATCATTGAAAGATGGATATGAAACAGAATGTGGAGAAAGGGGAGTGCAACTATCTGGAGGGCAAAAGCAGAGAATAGCAATAGCAAGGGCCATAATAAGGAACCCAACAATATTGCTGCTTGACGAAGCAACAAGTGCACTTGATGTTCAATCAGAACAAGTTGTGCAAGAAGCATTAGACAGGATCATGGTGGGAAGAACCACCATTGTTGTAGCACATAGGCTCAACACCATCAAAGAACTTGACTCGATTGCATATGTCTCAGAGGGTAAGGTTCTTGAGCAAGGAACCTATGCTCAACTTAGGCACAAGAGAGGTGCCTTCTTCAATCTTGCATGCCATCAAATCCAAAATTAG 2235 0.4362 ALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDHASLGRTTLVVAHKLSTVRNADVIAVVNAGSIIEIGTHNELITHPNGHYAKLAKLQTQLSFDDQQEISNAVSSAARSSAGRTSTARSTSPAIFQKSPIPIDDNTITPESSLVSHPSPSFPRLLSLNAPEWKQCLIGTFSAIAFGSVQPIYALTIGGMISAFFAESHSEMIHRIRTYSLIFTSLSLASITLNLLQHYNFAYMGAKLTKRIRQRMLENILTFETAWFDEENNSSGALCSRLSNEASMVKSLVADRVSLLVQTASAVSIAMIIGLAVAWKLALGMIAVHPLTILCFYTRKVLLSTLSSKFIKAQNHSTQIAVEAVYNHRIVTSFGSIQKVLTLFDEAQEAPRKEARKKSWLAGIGMGSAQCLTFMTWALDFWYGGTLVEKKDISAGDVFKTFFVLVSTGKVIAEAGSMTSDLAKSSTAVKSVFEILDRKSLIPKAGDCNNGRKLENMSGKIELKNVDFAYPSRAGTPILRKFCLEVKAGKSIGLVGKSGCGKSTVIALIQRFYDVERGFVKMDNVDIRELDIQWYRQHTALVSQEPVIYSGTVRDNILFGKQDATENEVVEAAKAANAHEFISSLKDGYETECGERGVQLSGGQKQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMVGRTTIVVAHRLNTIKELDSIAYVSEGKVLEQGTYAQLRHKRGAFFNLACHQIQN 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst26234348g00001 744 Gene3D - 494 744 IPR027417 -
Arst26234348g00001 744 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 504 740 IPR003439 GO:0005524
Arst26234348g00001 744 Pfam ABC transporter 3 31 IPR003439 GO:0005524
Arst26234348g00001 744 CDD ABC_MTABC3_MDL1_MDL2 504 738 - -
Arst26234348g00001 744 ProSitePatterns ABC transporters family signature. 643 657 IPR017871 GO:0005524|GO:0016887
Arst26234348g00001 744 FunFam Putative ABC transporter B family member 8 145 489 - -
Arst26234348g00001 744 Pfam ABC transporter 525 671 IPR003439 GO:0005524
Arst26234348g00001 744 Gene3D - 2 103 IPR027417 -
Arst26234348g00001 744 CDD ABC_6TM_Pgp_ABCB1_D2_like 169 485 - -
Arst26234348g00001 744 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 180 467 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Arst26234348g00001 744 MobiDBLite consensus disorder prediction 118 157 - -
Arst26234348g00001 744 Pfam ABC transporter transmembrane region 180 450 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Arst26234348g00001 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 102 IPR027417 -
Arst26234348g00001 744 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 181 737 IPR039421 -
Arst26234348g00001 744 FunFam ABC multidrug transporter SitT 494 742 - -
Arst26234348g00001 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 494 741 IPR027417 -
Arst26234348g00001 744 Gene3D ABC transporter type 1, transmembrane domain 146 489 IPR036640 GO:0005524|GO:0016020
Arst26234348g00001 744 Gene3D ABC transporter type 1, transmembrane domain 104 122 IPR036640 GO:0005524|GO:0016020
Arst26234348g00001 744 SMART AAA_5 531 723 IPR003593 GO:0016887
Arst26234348g00001 744 SUPERFAMILY ABC transporter transmembrane region 166 481 IPR036640 GO:0005524|GO:0016020
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst26234348g00001 3 734 Calmodulin-binding Proteins AT2G36910 43.386 0.0 595