Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g04315 ATGCCCCTGCATAAGAATATTTCCAAGCTGTTCCAAGAACTTGTGTACTGCATCGGCATCTTGCAAACTTCCATCTACCAACATATGCTGAAAGAAGAAGAGCAGGTTTTTCCACTGGTGATACAAAAATTACCTACCGAAGAACAGGCTTCGCTTGTGTGGCAATTCATATGTAGTGTTCCTATAATATTGCTGGAGGAACTTTTGCCATGGATGGTATCCTTCCTTTCCGAAGAGAAACAAGCAGAAGTCACTCAGTGTATAAATGAAATTGCACCAATGGAAAAAACACTCCAAGAGGTTTTGGTTTCTTGGATTGGAAGCAACAAACAAAGCTTCACTGAAGTCTCTTTTAAGGATGAAGTTCAAGGTGGTGCTCAATCCTTAGATATTGCAAGATCATTTCCGTTGGGTTCTTGCAATAGGAACTTCAAAGAACTTTCAAGTCAGATGGAAGTGAATGGCCCAAAAGACAAAGATGGGACAACCCAGAATTTAGAATCACTGCTTATCCAACTGAAATTCTTTGCTGATGTCCTCACGTTCTACAGCAATGCTCAGAAAAGATTAGTATTGAAGAAACTTGCTGGTGACTGGTTGTCAAAGTCTACGGAAAACTTTTGTGATGTAAGTCACATTGAAGATTTACAGCAGTTGTTATTCTATAGATCGGAAAGTGGAATGCCTTTGTGCGAATTCGTAGGGAACCTTTGTCAAAAACTTGAATCATTCGTATCAAGGCTCAGAAAACAATTCGCCTTTCAAGAAAATGAGGTATTTCCTGTCATTAGAAAGAATTGCAGCAATGGGATGCAAGAGGGACTTCTGAGCTTGAGCCTGTATATGATGCCACTTGGGTTAGTAAAGGGTGCTATAACTTGGTTTTCAGTTCACCTGCCTGAAAAAGAATCCAGGTCCATTCTCTATTTCAAAAAGAAAGGAAATGATGTTGCCTGTAAAGGTTTTGCATCGCTCTTACAAGAGTGGTTCCGCATTGGGTATTCAGGTAAAACTGCTATTCAAAAATTCCGACAGGACTTGCACCATATGTTCAAAAGCAAATACTCTTTCTTACCTGAGCAAATCAAGAAAGCGCCTGGGTTTTCTTTAAATTCTGACTGCCTGCCTCATAAGGTCTCTAGCAAGATGTGTCTGTCCTATCCCTCACCTTCGGGATCCAACAAGTACGACACACCATACTCCACAGGAATTAATCTGCATATACTTTTTCCGGCCACAGTTGTTAAGTTGCATCAGAAGCTGGGATGCCATGCGGCAAATAGTTCTTCTGTTTCCTTTCTTGAAGATCCAAAACCAATTGACATAATATTTTTCTTTCACAAGGCTATCAAGAAAGATTTGGACTACCTAGTTCTTGGCTCAGCTCAGTTAGAAGACAATGCTGAGTTGCTTATGGATTTCCACAAGCGATTCCACATCATATATTTTCTTTATCAAATCCATAGTGATGCAGAGGATGAAATAGTTTTCCCAGCTTTGGAGGCAAGTGGTAGGCTAAAAAACATTAGCCATGCCTACGCTTTCGATCACAATGTTGAAGTTAAACACTTCAATAAAATATCCCACATCCTTCATAAGATGTCTGAATTAGATATTTCGGTTTCTACATCCTTGGTAAGGTATCAGCATTTATGTAGGAAGCTGCAACAAATCTGCAAATCAATGCATAAATCACTTTCAGGCCATATTGACCGGGAGGAAGCAGAAATTTGGCCTCTAAGTAGAGAATTCTTCTCAAATAAGGAGCAAGGGAAGATCATAGGATGCATGCTTGGAAGAATAGGAGCACAGATATTGCAAGATATGATACCTTGGCTAATGGCATCGTTAACACAGAAAGAACAGCATGTTTTAATGTTCTTATGGTCCATGGCTACTAAAAATACAATGTTCAACGAGTGGCTAAGTGAATGGTGGGATGGGTACAGTATAACTAAGCCAGAAGAGGGAACAAAGCATGCACTTAAAGAGACTGTTGAGCCACTGGAGATAATATCTAAATACTTTTCTGAAGAAGTTCTTGATGAATTACAAGAAGAACCCTCATCCAACACAAATACTGATTTTCATCAGAAGGATCATATTGGTGATAATGTCCAGCTGTCTAACAACAAATTTGATGGCACAGTTAAGGTTCAAGCTGCAGCACAGAATAAAAATGAAATTTCAAAATCCACAAATCGTTTTCATGATAACAACAAACATGGTTGGAATCAAGAAAAGGAAGGAATCACAAATCCAATCAAAATTGAAGATCAATCATTTCAATTTCGTCACAATTCCAGGCATTATGACCGGCTTCTGAAACTGAGTCAAGATGATCTGGAGAAAGCAATAAGAAGGGTAACTCGCGATTCCTCCTTAGATCCTCAAGAAAAGTCATACATAATACAGAACCTGCTAATAAGCCGTTGGATTATTAGACAGAAGATATCCTTTACAGAAGTTGATGTCAAAAATGATGAGCAGGAATTTCCTGGGAAGCATCCATCCTATAGGGATCCTCTCAAACTAATTTATGGTTGCAAACATTACAAGAGAAACTGTAAGATTTTTTGCCCCTGTTGCAACCAACTTCATACTTGCATACATTGCCATAATGAGGTATCGGACCATATAATTGACAGGAAATCTATTACAAAAATGATGTGCATGGAGTGCTTAAACATTCAGCCCATTAATGCCACATGCTCAACTTCTTCCTGCAAGTTAACCATGGCAAAATATTACTGCTGGATCTGCAGATTATTTGAGGATGAAAAGGAAATTTACCACTGTCCCTATTGTAACCTGTGCCGAGTTGGGAAGGGATTGGGTACCACGTACTTTCATTGCATGAGTTGCAATGCATGTATGTCGCGTAGTCTTTTGGTACACACATGCCGGGAAAAACATTTAGAGGACAACTGTCCAATTTGTCATGAATATATCTTCACATCCCTGGCTCCGGTAAAAGCCCTTCCATGTGGTCATGTGATGCACTCAGCATGCTTTCAGGAATATACCGGCTTTAACTATACCTGCCCCATATGTAGCAAGTCAATTGTAGACATGCAGGACTATTTTAAGAAGTTAGATTCTTTATTGGCCGAAGAGAAAATGTCTGATGAGCTTTCCAGTCGAACTCAGGTTATATTATGTAATGACTGCGAAAAGAAAGGAGTAGCTCCCTTCCACTGGCGTTACCACAAATGCCCTTATTGTGGTTCCTACAACACCAGAGTTCTATGA 3252 0.3951 MPLHKNISKLFQELVYCIGILQTSIYQHMLKEEEQVFPLVIQKLPTEEQASLVWQFICSVPIILLEELLPWMVSFLSEEKQAEVTQCINEIAPMEKTLQEVLVSWIGSNKQSFTEVSFKDEVQGGAQSLDIARSFPLGSCNRNFKELSSQMEVNGPKDKDGTTQNLESLLIQLKFFADVLTFYSNAQKRLVLKKLAGDWLSKSTENFCDVSHIEDLQQLLFYRSESGMPLCEFVGNLCQKLESFVSRLRKQFAFQENEVFPVIRKNCSNGMQEGLLSLSLYMMPLGLVKGAITWFSVHLPEKESRSILYFKKKGNDVACKGFASLLQEWFRIGYSGKTAIQKFRQDLHHMFKSKYSFLPEQIKKAPGFSLNSDCLPHKVSSKMCLSYPSPSGSNKYDTPYSTGINLHILFPATVVKLHQKLGCHAANSSSVSFLEDPKPIDIIFFFHKAIKKDLDYLVLGSAQLEDNAELLMDFHKRFHIIYFLYQIHSDAEDEIVFPALEASGRLKNISHAYAFDHNVEVKHFNKISHILHKMSELDISVSTSLVRYQHLCRKLQQICKSMHKSLSGHIDREEAEIWPLSREFFSNKEQGKIIGCMLGRIGAQILQDMIPWLMASLTQKEQHVLMFLWSMATKNTMFNEWLSEWWDGYSITKPEEGTKHALKETVEPLEIISKYFSEEVLDELQEEPSSNTNTDFHQKDHIGDNVQLSNNKFDGTVKVQAAAQNKNEISKSTNRFHDNNKHGWNQEKEGITNPIKIEDQSFQFRHNSRHYDRLLKLSQDDLEKAIRRVTRDSSLDPQEKSYIIQNLLISRWIIRQKISFTEVDVKNDEQEFPGKHPSYRDPLKLIYGCKHYKRNCKIFCPCCNQLHTCIHCHNEVSDHIIDRKSITKMMCMECLNIQPINATCSTSSCKLTMAKYYCWICRLFEDEKEIYHCPYCNLCRVGKGLGTTYFHCMSCNACMSRSLLVHTCREKHLEDNCPICHEYIFTSLAPVKALPCGHVMHSACFQEYTGFNYTCPICSKSIVDMQDYFKKLDSLLAEEKMSDELSSRTQVILCNDCEKKGVAPFHWRYHKCPYCGSYNTRVL 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g04315 1083 ProSiteProfiles Zinc finger CHY-type profile. 842 911 IPR008913 GO:0008270
Arst1g04315 1083 CDD Hr-like 441 579 - -
Arst1g04315 1083 Gene3D nmb1532 protein domain like 435 598 - -
Arst1g04315 1083 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 483 1083 - -
Arst1g04315 1083 Pfam CHY zinc finger 849 923 IPR008913 GO:0008270
Arst1g04315 1083 SUPERFAMILY CHY zinc finger-like 840 905 IPR037274 GO:0008270
Arst1g04315 1083 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 970 1021 IPR013083 -
Arst1g04315 1083 Pfam Ring finger domain 975 1018 IPR001841 -
Arst1g04315 1083 SUPERFAMILY Zinc hairpin stack 914 968 IPR037275 -
Arst1g04315 1083 SMART ring_2 977 1018 IPR001841 -
Arst1g04315 1083 FunFam Zinc finger protein-related isoform 1 972 1021 - -
Arst1g04315 1083 ProSiteProfiles Zinc finger CTCHY-type profile. 913 976 IPR017921 -
Arst1g04315 1083 ProSiteProfiles Zinc finger RING-type profile. 977 1019 IPR001841 -
Arst1g04315 1083 Pfam Zinc-ribbon 1023 1081 IPR039512 -
Arst1g04315 1083 CDD RING-H2_Pirh2-like 976 1019 - -
Arst1g04315 1083 Gene3D - 1048 1083 - -
Arst1g04315 1083 SUPERFAMILY RING/U-box 964 1025 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g04315 Arst-Chr1 105822894 105831903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g04315 12 674 C2H2 Transcription Factor Family AT3G18290 28.866 8.67e-87 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g04315 K16276 - gmx:100802706 1635.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g04315 1 105822894 105831903 Arst1g04315 1 105822894 105831903 ECH