Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g04279 ATGGAAGGTAAAATGCTTATATTGGTGTTGTTATGTGTGTTCCCTACCTTAAATGCTAATATAGCTGAATTCGACCAAGTATGGATGGAGCGATCTATAGAAGCCAAAAAAGCAGCTCGCAAGGCTTTCAAGCCAAACCCTGAGGCAGTAACTGATGAATTCAATCAACATGTCAACAAGGACCTTGAAGGTTCCAATAAAACGAGAAGGGGTTTATCCGGCAAATACAAAGGTCCATGTATGGCTACAAATCCCATTGACCGTTGCTGGAGATGTGACCCCAATTGGGAGAAAAACCGCCAACGGTTAGCAGACTGTGCTATTGGTTTCGGCCACGGCACGACGGGCGGCAAAGGTGGCAAAATCTACGTTGTCAATGATCCCTCAGATCATGATCTCCTCAACCCAAAACCTGGGACTCTGCGATTCGCAGTGATTCAGAAGGAGCCATTGTGGATCATTTTTAAACATGACATGACCATCAAGCTTAGTAGTGAGCTTATAGTCACTAGTCACAAGACCATAGATGCACGTGGTGCCAATGTTCACATTGCCAATGGTGCCCAAATGACTCTACAGTTTGTGAAGAACATAATCGTTCATGGATTGCATATTCACGGCATCAGGAAACATGCCGGCGGCATGATAAGAGACTCGGTCGACCACTTTGGAATCCGCACTGAGAGCGATGGGGATGGGCTTTCATTGTTTGGAGCTACTAACATTTGGATTGATCATGTTTCTCTGTCAAATTGTGATGATGGACTTATTGATGCCGTTGCTGGATCAACAGCTATTACCATATCCAACTGCCACATGACTCGCCATAATGATGTAAATTACATCATCACTTTCTGTTACATCCTTTTTCTGCAGAAATATTTTGTTATATTACTTGGTGCAAGTGATGCCTACTCAGGAGATCAAATCATGCAAGTAACATTGGCATTCAACCATTTTGGGCAAGGATTGGTGCAGAGGATGCCAAGGTGCAGATGGGGTTTCTTCCATATTGTCAACAATGACTACACTCACTGGCTTATGTATGCCGTCGGTGGTAGCCAACATCCCACCATCGTCAGCCAGGGCAACCGATTTATCGCACCTCCAAACCCAGCTGCAAAAGAGGTTACCAAGAGGGATTATGCTCCTCAAAGTGTGTGGAAAAATTGGAATTGGAGATCAGAGGGTGACTTAATGCTGAATGGAGCCTTCTTTGTTGAGTCTGGGACGAAGGTTACAAACTTTCCCAAATCAGCAGGTATTACTGCAAAGCCTGGGAGTTTCACATCAAGTCTCACTCGCTTTGCAGGTCCTCTCAAATGTGTAGTACACAAGCCATGCTGA 1347 0.4469 MEGKMLILVLLCVFPTLNANIAEFDQVWMERSIEAKKAARKAFKPNPEAVTDEFNQHVNKDLEGSNKTRRGLSGKYKGPCMATNPIDRCWRCDPNWEKNRQRLADCAIGFGHGTTGGKGGKIYVVNDPSDHDLLNPKPGTLRFAVIQKEPLWIIFKHDMTIKLSSELIVTSHKTIDARGANVHIANGAQMTLQFVKNIIVHGLHIHGIRKHAGGMIRDSVDHFGIRTESDGDGLSLFGATNIWIDHVSLSNCDDGLIDAVAGSTAITISNCHMTRHNDVNYIITFCYILFLQKYFVILLGASDAYSGDQIMQVTLAFNHFGQGLVQRMPRCRWGFFHIVNNDYTHWLMYAVGGSQHPTIVSQGNRFIAPPNPAAKEVTKRDYAPQSVWKNWNWRSEGDLMLNGAFFVESGTKVTNFPKSAGITAKPGSFTSSLTRFAGPLKCVVHKPC 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g04279 448 Pfam Pectate lyase, N terminus 20 72 IPR007524 GO:0030570
Arst1g04279 448 Gene3D - 83 441 IPR012334 -
Arst1g04279 448 PANTHER PECTATE LYASE 18-RELATED 35 446 IPR045032 GO:0030570
Arst1g04279 448 SMART amb_all 158 372 IPR002022 -
Arst1g04279 448 SUPERFAMILY Pectin lyase-like 84 439 IPR011050 -
Arst1g04279 448 Pfam Pectate lyase 165 366 IPR002022 -
Arst1g04279 448 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Arst1g04279 448 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Arst1g04279 448 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Arst1g04279 448 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Arst1g04279 448 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g04279 Arst-Chr1 105308222 105310810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g04279 5 448 Polysaccharide Lyase AT3G01270 53.002 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g04279 K01728 - gmx:100801864 658.292