Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g04235 ATGAAAAAGCGGCAAGTGGTGATGGTGAGAAGAGATGCTTCTGCTTCGGATAATAACAACAATAATAATAATAATAATGTTGTTAAGTACGGAGAGTGTTTGAAGAATCATGCTGCCAATAGCGGTGGATATGCCGTGGATGGTTGCAGAGAGTTCATGGCCAGCGCCGCCGAGGGAACCACCGGGGCTCTTACCTGCGCCGCTTGTGGCTGCCATAGAAACTTCCATAGAAGAAAGGAACTAGCTGCACCATCCAGGAATGAGGACAATATCATGTGA 279 0.4695 MKKRQVVMVRRDASASDNNNNNNNNNVVKYGECLKNHAANSGGYAVDGCREFMASAAEGTTGALTCAACGCHRNFHRRKELAAPSRNEDNIM 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g04235 92 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Arst1g04235 92 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 81 - -
Arst1g04235 92 Pfam ZF-HD protein dimerisation region 28 80 IPR006456 -
Arst1g04235 92 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 29 79 IPR006456 -
Arst1g04235 92 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g04235 Arst-Chr1 104761931 104767128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g04235 1 79 Zinc finger-homeobox gene family AT3G28917 59.036 2.20e-27 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Arst1g04235 ZF-HD_dimer 2.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g04235 - - ahf:112722499 149.058