Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g04224 ATGGGAAGAGTTAAATTAAAGATAAAGAAATTGGAGAGCACCAGCAATCGCCAAGTGACTTATTCAAAGCGGAAAAGCGGAATCTTGAAGAAAGCAAAGGAATTGTCAATACTATGTGATATAGATATTGTTCTTCTCATGTTTTCTCCAACAGGAAAGCCTACATTGCTACAAGGAGAGCGCAGCAATATTGAGGAAGTCATTGCAAAATTTGCTCAACTTACCCCACAAGAAAGGGCCAAAAGGAAATTGGAAAGTCTTGAAGCACTAAAGAAAACCTTCAAGAAATTGGATCACGATGTAAAAATACAAGATTTCTTGGGTTCAAGCAGTCAAACTGTGGAGGAATTAACTCATCAAGTAAGGCTTCTACAAACGCAGCTAACAGATGTACATCAGAGACTGAGTTATTGGAATAATATTGACAAGATCAATAGCATAGAACACCTTAGGCAAATGGAAGAATCACTCAGGGAATCAATTAATCGAGTGTGTTTACAGAAGGAAAATTTGGGAAAGCACCAAATAATGTCTCTTGAATGTGCCAATCAGTTACAGGATGGAATGACTTTACCCTTGATGATGGCTGGTCTGCAAGAAAACCAACCATTGTCTTGGCTTTTGAATAACGATAACCATCAGTTGATGTTGCCGAGCGAACCGAAATATCTGCAATATAGCGATAATACCAATAGAGAAGCTGAGCGCTCAACTGATGTTTCGCTCCCTGGATACTCCAGTTACATTGCCAATAATGGCAAACTTGACAGCTCTCCCCAAGTCAATACCATAGGTCAGGCAGGCAGTGGCTTGAATGAGTTGAACGGCACTGCTTGCTTAAATATACAACGTTGTGAGCAATTTGCATACCCTCCTCCTCCTCCTCCTCCTCCAGATAATGAGGAAGTGAAACATCGCACGACAATGTATAATGAGAATGGCCATGATAAACTAAATACTTCAGATTACCAAGTTCATAATGGCTTTGATTTGCCAAGATCACTGTTTGAAAACGGACACCAGTTCTGGAATTCTGCTCCTGGGCCTTGTGGGGTTGCCATGTATAACGAGAATGGCTACCATAGGTAA 1089 0.4059 MGRVKLKIKKLESTSNRQVTYSKRKSGILKKAKELSILCDIDIVLLMFSPTGKPTLLQGERSNIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVKIQDFLGSSSQTVEELTHQVRLLQTQLTDVHQRLSYWNNIDKINSIEHLRQMEESLRESINRVCLQKENLGKHQIMSLECANQLQDGMTLPLMMAGLQENQPLSWLLNNDNHQLMLPSEPKYLQYSDNTNREAERSTDVSLPGYSSYIANNGKLDSSPQVNTIGQAGSGLNELNGTACLNIQRCEQFAYPPPPPPPPDNEEVKHRTTMYNENGHDKLNTSDYQVHNGFDLPRSLFENGHQFWNSAPGPCGVAMYNENGYHR 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g04224 362 Coils Coil 77 97 - -
Arst1g04224 362 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 193 - -
Arst1g04224 362 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Arst1g04224 362 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Arst1g04224 362 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Arst1g04224 362 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Arst1g04224 362 Coils Coil 114 134 - -
Arst1g04224 362 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst1g04224 362 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst1g04224 362 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst1g04224 362 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Arst1g04224 362 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst1g04224 362 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g04224 Arst-Chr1 104603461 104608498 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g04224 1 275 Type I MADS-box Gene Family AT2G03060 51.761 3.32e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Arst1g04224 SRF-TF 2.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g04224 - - aip:107633054 724.161