Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g04212 ATGGAGGGTCTGCGGCAAATATGGTGTCAACAGCACCGGTCTCTTTCTCAGCTTCTTTTCCTCCGATCAATTTCTTCCAAGATTTTTGTCAAAGGTTTAGCATTTTCTACCACAAAAGAGAAATTAGCTGAAGCCTTTTCAGAATATGGCAATGTCCTAAATGCTGATATAGTACTGAACAAAGCCAAGAACAGATCTAAGGGTTTTGGATATGTGACCTTTGCTAAGGAGGAAGAAGCCCGCAAGGCACAGATGGCTATGAATGGAAAGATATTGCATGGACGTGTTCTGTACGTGGATATGGAACCAAATAAGAAACCAGAAAAATCATCTTTTGACAAGGCAACTACTGATGGTTGA 360 0.4083 MEGLRQIWCQQHRSLSQLLFLRSISSKIFVKGLAFSTTKEKLAEAFSEYGNVLNADIVLNKAKNRSKGFGYVTFAKEEEARKAQMAMNGKILHGRVLYVDMEPNKKPEKSSFDKATTDG 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g04212 119 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Arst1g04212 119 SUPERFAMILY RNA-binding domain, RBD 26 107 IPR035979 GO:0003676
Arst1g04212 119 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 23 106 - -
Arst1g04212 119 SMART rrm1_1 27 100 IPR000504 GO:0003723
Arst1g04212 119 Gene3D - 16 114 IPR012677 -
Arst1g04212 119 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g04212 Arst-Chr1 104465467 104471478 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g04212 20 99 Eukaryotic Initiation Factors Gene Family AT1G22760 41.250 2.85e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g04212 - K13195 gmx:100527061 145.976