Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g04208 ATGTCTCCCCCATCCGTCGATCAAGGTAACGCCGATCCAGAGGAAGAAGAAGAAGAAGAAGTAGAAGAAGAAGTAGAAGAGGAGGTAGAGGAGGAAGAAGAAGAGGAAGAGGAGGAAGAAGAAGAAGAAGATGTACAGGAAGAGGAAGAGGAAGAGGAGGAAGAAGAGGTAGAGGTAGAGGTAGAAGAAGAGGTAGAAGAAGGAGAAGAAGAGGAGGAGGTAGAGGAAGAAGAAGAGGAGCCAGAAAACGACGGTGATGATAAAGGCTACGCCTCAGATTCTGTATCCGATGCCGACAACGATCGCATAGATTCATGCCAACAAATGGAATCTGAAGTACAAGAGAGGAACTTGAGGCCAACTTATACTATGGCGGAAAACCCTATAGTAATGTCTTCTCCTAGTATGCCATCCAATGAAGAGAATCATGCCATTCTCAAAGCATCTAGTCCTTCATCTGAGGAACTAAGTTTTAAAAAGGAAGACGTTCACGCAACACGCGAAATTTCAAGTCATCCCAAATCAGTAAATGATTTTGCTTCCGCTAAAGATGGCAAAAGTCAAGTTTTAGACTCCAGCCAACAGATGAAATCTGAGGGACTAGGGGGGGACTTGAGGCCAGCTTCTACCGTGGCAGAAAACCCTGTAATAAAGCCTTCTCCTAGTCTGTGTTCCAAAGAAGAGAATTGTGTCATTCTCAAAGCATGTGTTGTTTCTGCTCCTTCATCTGACACGCTAGCTTTGAAAAAGGAACAAGTTTTCCCAACTCCAAAAATTTCAAATTCTTGTCATCCCAAATCAGTTAAAGACTTGGCCCCAGCAGATGATGGCAAAAATCAAGTTTTAGATGTTGATGGTGCAAATACTGGAATTGTTCAACTAACATACAATGTTGGAGGGTGCAATGAACCAAGTAACGATAGCAAAGCTGATTTAGGTGGTGTTAAGGATATGGATTCTGGGGCCACCAAGTTGTCTAGTAACATTGGAAAAGACATCGCTATTGGCCTTCCTCAAACGGATGCCTTTGTTGGGAGTGCCAATGGCAGTCAGAATTCCTTGAAAAGAACTGTACCATTGGAAGTAGAATCAAAGGATGATGTAAAACAAATCAAATCAAGGACTATAGTTCCGTCTTCGAATACTGAGATGAAGGATGGAAACAAACACCAGGGAATTATATGTGCCTTTTTTGCTAAAGGGTGGTGCATCAGAGGTAATTCCTGTAGCTTTCTTCATATAAAAGATTCTGCAAAGGATACTGGCCAGGAGACTCAGGGGGACTTGGATAAAGCAAAGCAGAAGAGAGAACTGGAATTAGAAGAAGGTACCAGGGACAATATCAAAAGAACCAGGACGAATGACCAAGAAGAAATCTCAGACTGGCATCCTTGTCAAGAAAAAAATAAGTACCAGTTGAGGGACATCTTGTTTCCAGAGAGTAGATTTACAAGCAAATATTTCAACACAAATCTCTCATCCTATTCAAATCATGCAGCGGGATTGAGTATAGCTCAAAACCATCATATGTACAATGGATATACTTCTGCAGTTTTGAGTCGTTCACCTAAGTTGAGCTTTGTTACTCAGAAACTTTTGAATAGTGACAAAGAATATAATGCCTCTAGATCTGCTTTCTCTGGCTCAGAGCGGGAGGAGTTGCCATCGGTTGGTTCATCTAGGATTCCAATACACTCTGCCGCATATATATCAAAAATATGTTCTTATGATTGGGAACCTTCTGTGCCATTTCGACCATCATTTTTCATTACGTCAATGAATGTATCATCTCTGGGAGACCTGTATGACCCTCTTCGAGATAGCATTGAGATACCAAATATAGGAGATGGGTCTTTGAAAGCTTCCCTCTTAATTCATGGATCATCCATCCAGGCTTCATCACAGGTGCTGAAATATGGCGATTCAGCTGTAGTTGGGAAACATATGTCTGATTTTAATGATGAGAAAAGTTCCGTATCTTCTCATAATAGATTTGGTGAGAACCAACCAAACAAAAATTTGGTTCCTCATGAAAAAGATTGTCATGCAACTGAAATGGAAATAACATCAGGGACTTGTATGAACTACCCCAATGGTAAAATCGGCATGGGGAAAGATGTTACAAAATCAGAGAGAGAATGGACTGAACATGATGCCAAACATCATGGTGAAGGATCAGCGCACAAGAAGAGAGTAGATAGGGATAAGAAAATTAATGATACAGATGCCGATTTGCAGACTGACTGCAGTGTGCAGAAGGATTCCAAAGCAATGAGACACTTTCGTGCAGCTCTTGTTGACTTGGTGAAAGAGTTGTTAAAACCATCTTGGCACGAGGGCCGTCTTAGTAAGGATGCACATATCTTGATAGTTAAAAGATCAGTTGACAAGATACTCAGCACCTTAGAGCCTCAGCAAATTCCAACCACTATAGATGCTACTAAGCAATATGTTTCTTTGTATCGTGGAAAAATTGCAAAGATGGTCAATGGATATATCAACAAATTTGGCAAGTCTTGA 2520 0.4111 MSPPSVDQGNADPEEEEEEEVEEEVEEEVEEEEEEEEEEEEEEDVQEEEEEEEEEEVEVEVEEEVEEGEEEEEVEEEEEEPENDGDDKGYASDSVSDADNDRIDSCQQMESEVQERNLRPTYTMAENPIVMSSPSMPSNEENHAILKASSPSSEELSFKKEDVHATREISSHPKSVNDFASAKDGKSQVLDSSQQMKSEGLGGDLRPASTVAENPVIKPSPSLCSKEENCVILKACVVSAPSSDTLALKKEQVFPTPKISNSCHPKSVKDLAPADDGKNQVLDVDGANTGIVQLTYNVGGCNEPSNDSKADLGGVKDMDSGATKLSSNIGKDIAIGLPQTDAFVGSANGSQNSLKRTVPLEVESKDDVKQIKSRTIVPSSNTEMKDGNKHQGIICAFFAKGWCIRGNSCSFLHIKDSAKDTGQETQGDLDKAKQKRELELEEGTRDNIKRTRTNDQEEISDWHPCQEKNKYQLRDILFPESRFTSKYFNTNLSSYSNHAAGLSIAQNHHMYNGYTSAVLSRSPKLSFVTQKLLNSDKEYNASRSAFSGSEREELPSVGSSRIPIHSAAYISKICSYDWEPSVPFRPSFFITSMNVSSLGDLYDPLRDSIEIPNIGDGSLKASLLIHGSSIQASSQVLKYGDSAVVGKHMSDFNDEKSSVSSHNRFGENQPNKNLVPHEKDCHATEMEITSGTCMNYPNGKIGMGKDVTKSEREWTEHDAKHHGEGSAHKKRVDRDKKINDTDADLQTDCSVQKDSKAMRHFRAALVDLVKELLKPSWHEGRLSKDAHILIVKRSVDKILSTLEPQQIPTTIDATKQYVSLYRGKIAKMVNGYINKFGKS 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g04208 839 MobiDBLite consensus disorder prediction 10 86 - -
Arst1g04208 839 SUPERFAMILY CCCH zinc finger 390 413 IPR036855 GO:0046872
Arst1g04208 839 MobiDBLite consensus disorder prediction 148 208 - -
Arst1g04208 839 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 394 413 IPR000571 GO:0046872
Arst1g04208 839 MobiDBLite consensus disorder prediction 154 171 - -
Arst1g04208 839 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 365 837 - -
Arst1g04208 839 MobiDBLite consensus disorder prediction 87 109 - -
Arst1g04208 839 MobiDBLite consensus disorder prediction 1 122 - -
Arst1g04208 839 MobiDBLite consensus disorder prediction 653 676 - -
Arst1g04208 839 Coils Coil 11 80 - -
Arst1g04208 839 ProSiteProfiles Zinc finger C3H1-type profile. 394 416 IPR000571 GO:0046872
Arst1g04208 839 MobiDBLite consensus disorder prediction 711 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g04208 Arst-Chr1 104408507 104412834 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Arst1g04208 zf-CCCH 5.2e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g04208 - - aip:107633879 1460.28