Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g04147 ATGGCTTTCTTTGGTCGAATTGGGAATTTACTCAGAAATGCTGCAAACAAGCAGATCAGTTCAGAATTGCTCTCATCCCCATCTATTTTCCAGGCAATACGGTGCATGTCATCTGCTCCAAGCTCAAAACTGTTCATTGGAGGTGTTTCATATTCTACTGATGAGCAAGGTTTGAGGGAGGCATTTTCAAGATATGGAGAAGTTGTTGATGCAAGGATAATTGTGGATCGTGATAGTGGTAGATCCAGGGGATTTGGTTTTGTTACTTTCAGTTCAGCTGAGGAGGCATCAAGTGCTATTCAAGCCTTGGATGGACAGGATCTTCATGGTCGCCGGATTAGGGTAAATTATGCTAATGAAAGGCCCCGTGGATTCGGCGGTGGAGGTGGTGGTTTTGGTGGTTCTTATGGAAATGCACCATATGGTGCTGGTGCTGGTGCTGGCTACGGTAGTGCTTACGGTAACTCTCCTTATGATGGTGCTCCAGGTGGTGGTGGTGGCGGTGGCGGTTATGGTGGCAATGCTGCTGGAGGTTACGGTGGAGGCGGCTATGGATCTGGTGGCAATTATGGTCGCGGTGGCTATGACAATAACTATTCCACTCCTGACAGTTTTGGAAGTAGCAGTGCTGGTGGCAGTGGAGATTATGGTGGTAACAGTGGGAATTTTGGTGTTGCTGGTGGTGGTGGAGGAAGTGATAGCTATGGCAGTGCTCCTGGTTTTGATGCTGCTGCTGGTGTAGGTAGTCATGAAACATCTGCTGGTTTTGGTGGCAGTGATAATTATGCCAGTGCTGGTGGATTTGATGGAAGTGAGGGATCCGGGTATGGCAGTAGTGGCCAACTGGATAACAAAGAAACCAGCATTGAAGGCAACGATATGGACTTAGTCGAAGGAAATTACAAAGATGACAATGATGATACCGACGACTTTGCCAAAAGGGCCTGA 948 0.4768 MAFFGRIGNLLRNAANKQISSELLSSPSIFQAIRCMSSAPSSKLFIGGVSYSTDEQGLREAFSRYGEVVDARIIVDRDSGRSRGFGFVTFSSAEEASSAIQALDGQDLHGRRIRVNYANERPRGFGGGGGGFGGSYGNAPYGAGAGAGYGSAYGNSPYDGAPGGGGGGGGYGGNAAGGYGGGGYGSGGNYGRGGYDNNYSTPDSFGSSSAGGSGDYGGNSGNFGVAGGGGGSDSYGSAPGFDAAAGVGSHETSAGFGGSDNYASAGGFDGSEGSGYGSSGQLDNKETSIEGNDMDLVEGNYKDDNDDTDDFAKRA 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g04147 315 SUPERFAMILY RNA-binding domain, RBD 38 147 IPR035979 GO:0003676
Arst1g04147 315 PRINTS Eggshell protein signature 38 54 - -
Arst1g04147 315 PRINTS Eggshell protein signature 153 163 - -
Arst1g04147 315 PRINTS Eggshell protein signature 177 195 - -
Arst1g04147 315 PRINTS Eggshell protein signature 126 141 - -
Arst1g04147 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Arst1g04147 315 Gene3D - 14 137 IPR012677 -
Arst1g04147 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Arst1g04147 315 CDD RRM2_NsCP33_like 43 118 - -
Arst1g04147 315 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 28 212 - -
Arst1g04147 315 SMART rrm1_1 43 116 IPR000504 GO:0003723
Arst1g04147 315 MobiDBLite consensus disorder prediction 256 315 - -
Arst1g04147 315 MobiDBLite consensus disorder prediction 288 315 - -
Arst1g04147 315 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g04147 Arst-Chr1 103496926 103499634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g04147 42 181 Eukaryotic Initiation Factors Gene Family AT3G16380 32.639 9.48e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g04147 K12741 - gmx:100799124 227.254