Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g04110 ATGGAATCTTCTTGGGATTATGTTACTGAAGAAGATAAGGGGTATGTCTCCAACGATGCACTTTCTGCTGCACCTCCTCCTCCTCCTAGTACCCTTTTGAGAAGCAAAAGTTCCTTCCTTGGATGGGAACTGAAAACCCCATGTTCTAGCTTTGACAATCAATGTTTTGAAGAACTTGGTTTCCCTGAACTGTTGGGGAAACCATTGTTTAATGATCTAATTGGAGGTAGTGGACATGGTGGAAGAATCACAAGTAGTAGTAATAGTACTATTACAACTACTACTACTGTTGTGGACTCCAGTAGTGGCCGTGATTCCCTCATTGATTTGAAGCTTGGAAGATTTGCTGATCATGCTGATGTTAATGTTGCATCATTTTCCAAAGGAGCACCTGTTTTGTGTTCTTCTGTGTCGTCCACGGCCCCGAAGAGACCGCGAGGCTCTTTGGGTTTGCACTCGCAGACTTCTTACTGCCAAGTCTATGGCTGTAACAAGGATCTCAGCTCCTCTAAAGATTACCACAAGAGACACAAAGTTTGTGAGGTTCATTCCAAGACTGCCGTAGTTATAGTCAATGGCATTGAGCAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTCGATGATGGTAAGCGCAGCTGTCGCAAACGCCTTGCAGGACATAACGAACGGCGAAGAAAACCACAAGCAGATAGCAGATTCCAGGGAACCATGCTATCGTCGGCATCTTTCATCTCCTCGGATTCAGATAAATACGGAATGAGTAGCTTCTGGAAACACGGGTCCGATTTTTGGCATCCTGAGTCAAGATCTCTTTTCCCTTCATACAATGGAAAACAATTTCCCTTTCTTCATGAGAGTGGTGCTACACCCACTACTACTGAAAGCATCTTCTATGAAAACAATAACCAATATAAGCATGTCATTGCAGCCCAACATCCAGGGTCAAGACCACTATTTCAGAACAGCTCCTTAGGAAGTGACGACTTCAATCTTTTCGATACATCATCAACTGTTCAAGGATTGTCGGGAATTTCGGACTCGTGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAGGCCAGTCGTCCGGAATTCCCTTTGTTCCCCCCATGGTTAGTCCAAGCAGCCACAGCCATCCTTGCAGCATAAGTCAAGTCTCTGAAAAGATAGGAATGAGCTCGCAAACTTCTTCGTGCCGAGTGTACGATAGGTTTCCATCGGCGTTGAATCCTGCAAGTGGAAGCCAGCTTAGTCCTATACTTATATCAGACAATAACAATATTGTCAACTTCGAAATGGCAGACCGGATTTTCCAAGGTTCAGACTTTGCTAATGCTAGAGATCGTCTTTCATGTGAAGATGTTGCAACAATTGACTTGCTACAGCTGTCGTCGCAGCTTCAACGAGTCGAGCATCAAAGGCAGTCCTTGCAGGTTAAGCAAGAAAATGATTCTTCCTGCACTCTCCGGATTACTTAA 1503 0.4438 MESSWDYVTEEDKGYVSNDALSAAPPPPPSTLLRSKSSFLGWELKTPCSSFDNQCFEELGFPELLGKPLFNDLIGGSGHGGRITSSSNSTITTTTTVVDSSSGRDSLIDLKLGRFADHADVNVASFSKGAPVLCSSVSSTAPKRPRGSLGLHSQTSYCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAVVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQADSRFQGTMLSSASFISSDSDKYGMSSFWKHGSDFWHPESRSLFPSYNGKQFPFLHESGATPTTTESIFYENNNQYKHVIAAQHPGSRPLFQNSSLGSDDFNLFDTSSTVQGLSGISDSCCALSLLSSQSQNSSGQSSGIPFVPPMVSPSSHSHPCSISQVSEKIGMSSQTSSCRVYDRFPSALNPASGSQLSPILISDNNNIVNFEMADRIFQGSDFANARDRLSCEDVATIDLLQLSSQLQRVEHQRQSLQVKQENDSSCTLRIT 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g04110 500 Gene3D - 150 219 IPR036893 GO:0003677|GO:0005634
Arst1g04110 500 Pfam SBP domain 158 231 IPR004333 GO:0003677
Arst1g04110 500 Coils Coil 468 488 - -
Arst1g04110 500 ProSiteProfiles Zinc finger SBP-type profile. 155 232 IPR004333 GO:0003677
Arst1g04110 500 FunFam Squamosa promoter-binding-like protein 14 150 219 - -
Arst1g04110 500 SUPERFAMILY SBT domain 157 236 IPR036893 GO:0003677|GO:0005634
Arst1g04110 500 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 77 486 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g04110 Arst-Chr1 103087489 103091142 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g04110 108 232 SBP-box Gene Family AT1G69170 63.200 4.78e-46 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Arst1g04110 SBP 4.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g04110 - - adu:107468861 910.983