Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g04109 ATGGAATCTTCTTGGGATTATGTTACTGAAGAAGATAAGGGGTATGTCTCCAACGATGCACTTTCTGCTGCACCTCCTCCTCCTCCTAGTACCCTTTTGAGAAGCAAAAGTTCCTTCCTTGGATGGGAACTGAAAACCCCATGTTCTAGCTTTGACAATCAATGTTTTGAAGAACTTGGTTTCCCTGAACTGTTGGGGAAACCATTGTTTAATGATCTAATTGGAGGTAGTGGACATGGTGGAAGAATCACAAGTAGTAGTAATAGTACTATTACAACTACTACTACTGTTGTGGACTCCAGTAGTGGCCGTGATTCCCTCATTGATTTGAAGCTTGGAAGATTTGCTGATCATGCTGATGTTAATGTTGCATCATTTTCCAAAGGAGCACCTGTTTTGTGTTCTTCTGTGTCGTCCACGGCCCCGAAGAGACCGCGAGGCTCTTTGGGTTTGCACTCGCAGACTTCTTACTGCCAAGTCTATGGCTGTAACAAGGATCTCAGCTCCTCTAAAGATTACCACAAGAGACACAAAGTTTGTGAGGTTCATTCCAAGACTGCCGTAGTTATAGTCAATGGCATTGAGCAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTCGATGATGGTAAGCGCAGCTGTCGCAAACGCCTTGCAGGACATAACGAACGGCGAAGAAAACCACAAGCAGGTATTCACTCTGGAAAGGCTGCGAGGTTGCTTCATCCATGTGATAGCAGATTCCAGGGAACCATGCTATCGTCGGCATCTTTCATCTCCTCGGATTCAGATAAATACGGAATGAGTAGCTTCTGGAAACACGGGTCCGATTTTTGGCATCCTGAGTCAAGATCTCTTTTCCCTTCATACAATGGAAAACAATTTCCCTTTCTTCATGAGAGTGGTGCTACACCCACTACTACTGAAAGCATCTTCTATGAAAACAATAACCAATATAAGCATGTCATTGCAGCCCAACATCCAGGGTCAAGACCACTATTTCAGAACAGCTCCTTAGGAAGTGACGACTTCAATCTTTTCGATACATCATCAACTGTTCAAGGATTGTCGGGAATTTCGGACTCGTGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAGGCCAGTCGTCCGGAATTCCCTTTGTTCCCCCCATGGTTAGTCCAAGCAGCCACAGCCATCCTTGCAGCATAAGTCAAGTCTCTGAAAAGATAGGAATGAGCTCGCAAACTTCTTCGTGCCGAGTGTACGATAGGTTTCCATCGGCGTTGAATCCTGCAAGTGGAAGCCAGCTTAGTCCTATACTTATATCAGACAATAACAATATTGTCAACTTCGAAATGGCAGACCGGATTTTCCAAGGTTCAGACTTTGCTAATGCTAGAGATCGTCTTTCATGTGAAGATGTTGCAACAATTGACTTGCTACAGCTGTCGTCGCAGCTTCAACGAGTCGAGCATCAAAGGCAGTCCTTGCAGGTTAAGCAAGAAAATGATTCTTCCTGCACTCTCCGGATTACTTAA 1545 0.4453 MESSWDYVTEEDKGYVSNDALSAAPPPPPSTLLRSKSSFLGWELKTPCSSFDNQCFEELGFPELLGKPLFNDLIGGSGHGGRITSSSNSTITTTTTVVDSSSGRDSLIDLKLGRFADHADVNVASFSKGAPVLCSSVSSTAPKRPRGSLGLHSQTSYCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAVVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQAGIHSGKAARLLHPCDSRFQGTMLSSASFISSDSDKYGMSSFWKHGSDFWHPESRSLFPSYNGKQFPFLHESGATPTTTESIFYENNNQYKHVIAAQHPGSRPLFQNSSLGSDDFNLFDTSSTVQGLSGISDSCCALSLLSSQSQNSSGQSSGIPFVPPMVSPSSHSHPCSISQVSEKIGMSSQTSSCRVYDRFPSALNPASGSQLSPILISDNNNIVNFEMADRIFQGSDFANARDRLSCEDVATIDLLQLSSQLQRVEHQRQSLQVKQENDSSCTLRIT 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g04109 514 Pfam SBP domain 158 231 IPR004333 GO:0003677
Arst1g04109 514 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 77 500 IPR044817 GO:0003677
Arst1g04109 514 Coils Coil 482 502 - -
Arst1g04109 514 ProSiteProfiles Zinc finger SBP-type profile. 155 232 IPR004333 GO:0003677
Arst1g04109 514 SUPERFAMILY SBT domain 157 235 IPR036893 GO:0003677|GO:0005634
Arst1g04109 514 Gene3D - 150 219 IPR036893 GO:0003677|GO:0005634
Arst1g04109 514 FunFam Squamosa promoter-binding-like protein 14 150 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g04109 Arst-Chr1 103087487 103091142 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g04109 108 263 SBP-box Gene Family AT1G69170 54.487 8.43e-48 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Arst1g04109 SBP 5.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g04109 - - adu:107468861 946.421