Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g04108 ATGGAATCTTCTTGGGATTATGTTACTGAAGAAGATAAGGGGTATGTCTCCAACGATGCACTTTCTGCTGCACCTCCTCCTCCTCCTAGTACCCTTTTGAGAAGCAAAAGTTCCTTCCTTGGATGGGAACTGAAAACCCCATGTTCTAGCTTTGACAATCAATGTTTTGAAGAACTTGGTTTCCCTGAACTGTTGGGGAAACCATTGTTTAATGATCTAATTGGAGGTAGTGGACATGGTGGAAGAATCACAAGTAGTAGTAATAGTACTATTACAACTACTACTACTGTTGTGGACTCCAGTAGTGGCCGTGATTCCCTCATTGATTTGAAGCTTGGAAGATTTGCTGATCATGCTGATGTTAATGTTGCATCATTTTCCAAAGGAGCACCTGTTTTGTGTTCTTCTGTGTCGTCCACGGCCCCGAAGAGACCGCGAGGCTCTTTGGGTTTGCACTCGCAGACTTCTTACTGCCAAGTCTATGGCTGTAACAAGGATCTCAGCTCCTCTAAAGATTACCACAAGAGACACAAAGTTTGTGAGGTTCATTCCAAGACTGCCGTAGTTATAGTCAATGGCATTGAGCAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTCGATGATGGTAAGCGCAGCTGTCGCAAACGCCTTGCAGGACATAACGAACGGCGAAGAAAACCACAAGCAGGTATTCACTCTGGAAAGGCTGCGAGGTTGCTTCATCCATGTGGTAGTGATAGCAGATTCCAGGGAACCATGCTATCGTCGGCATCTTTCATCTCCTCGGATTCAGATAAATACGGAATGAGTAGCTTCTGGAAACACGGGTCCGATTTTTGGCATCCTGAGTCAAGATCTCTTTTCCCTTCATACAATGGAAAACAATTTCCCTTTCTTCATGAGAGTGGTGCTACACCCACTACTACTGAAAGCATCTTCTATGAAAACAATAACCAATATAAGCATGTCATTGCAGCCCAACATCCAGGGTCAAGACCACTATTTCAGAACAGCTCCTTAGGAAGTGACGACTTCAATCTTTTCGATACATCATCAACTGTTCAAGGATTGTCGGGAATTTCGGACTCGTGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAGGCCAGTCGTCCGGAATTCCCTTTGTTCCCCCCATGGTTAGTCCAAGCAGCCACAGCCATCCTTGCAGCATAAGTCAAGTCTCTGAAAAGATAGGAATGAGCTCGCAAACTTCTTCGTGCCGAGTGTACGATAGGTTTCCATCGGCGTTGAATCCTGCAAGTGGAAGCCAGCTTAGTCCTATACTTATATCAGACAATAACAATATTGTCAACTTCGAAATGGCAGACCGGATTTTCCAAGGTTCAGACTTTGCTAATGCTAGAGATCGTCTTTCATGTGAAGATGTTGCAACAATTGACTTGCTACAGCTGTCGTCGCAGCTTCAACGAGTCGAGCATCAAAGGCAGTCCTTGCAGGTTAAGCAAGAAAATGATTCTTCCTGCACTCTCCGGATTACTTAA 1551 0.4455 MESSWDYVTEEDKGYVSNDALSAAPPPPPSTLLRSKSSFLGWELKTPCSSFDNQCFEELGFPELLGKPLFNDLIGGSGHGGRITSSSNSTITTTTTVVDSSSGRDSLIDLKLGRFADHADVNVASFSKGAPVLCSSVSSTAPKRPRGSLGLHSQTSYCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAVVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQAGIHSGKAARLLHPCGSDSRFQGTMLSSASFISSDSDKYGMSSFWKHGSDFWHPESRSLFPSYNGKQFPFLHESGATPTTTESIFYENNNQYKHVIAAQHPGSRPLFQNSSLGSDDFNLFDTSSTVQGLSGISDSCCALSLLSSQSQNSSGQSSGIPFVPPMVSPSSHSHPCSISQVSEKIGMSSQTSSCRVYDRFPSALNPASGSQLSPILISDNNNIVNFEMADRIFQGSDFANARDRLSCEDVATIDLLQLSSQLQRVEHQRQSLQVKQENDSSCTLRIT 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g04108 516 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 77 502 IPR044817 GO:0003677
Arst1g04108 516 Pfam SBP domain 158 231 IPR004333 GO:0003677
Arst1g04108 516 Coils Coil 484 504 - -
Arst1g04108 516 ProSiteProfiles Zinc finger SBP-type profile. 155 232 IPR004333 GO:0003677
Arst1g04108 516 SUPERFAMILY SBT domain 157 235 IPR036893 GO:0003677|GO:0005634
Arst1g04108 516 Gene3D - 150 219 IPR036893 GO:0003677|GO:0005634
Arst1g04108 516 FunFam Squamosa promoter-binding-like protein 14 150 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g04108 Arst-Chr1 103087487 103091142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g04108 108 245 SBP-box Gene Family AT1G69170 60.145 2.27e-47 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Arst1g04108 SBP 5.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g04108 - - adu:107468861 955.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g04108 1 103087487 103091142 Arst1g04108 1 103087487 103091142 ECH