LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst1g04105	ATGGGAAGGGGTAAGGTTGAGTTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTTACATTTGCAAAGAGGAGAAATGGTTTGCTCAAGAAGGCTTATGAACTCTCAGTTCTTTGTGATGCCGAAGTTGCCCTCATCATCTTCTCTAATCGCGGCAAACTCTACGAGTTTAGCAGCACTTCTAGCATGATGAGAACTCTGGAGAAGTATCACAAGTATAGTTACAGTGCTCTCGAGTCTGGTCGACCAATCAGTGACACGCAGACAAATTACGAGGATTATAAGAGACTAAAAGACAATGTAGAAGCTCTCCAACGTTCTCAGAGGAACCTACTGGGGGAAGATCTTGCTCAAATGAATACAACTGAGCTGGACCAGCTTGAGAATCAACTTGAGGTAGCACTCAAGAATATTAGGTCAACTAAGACTCAGTTTATGCTTGACCAACTTACTGATCTTCAGAACCGGGAAATGGCGCTTGTTGAAACAAATAATGTGCTAAGGAGTAAGTTAGAAGAACTGAATAATCACTCATCAGAAGTGGCTTTGGAAGACGTGGGCCCCACCATTCACTACAACCGCTTTCCTTCTCAATCAGATCACCCATTTTTCCAACCTGTTCTAGGAGTTAATTCCAACTTGCAAATTGGATACAATCAAAGCATTCATCATGATGTGAACGTTGGAGCTTCATCCTTAACTATGCAGGGATTCGTCTCTGGGTGGATGCTTTGA	735	0.4259	MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMMRTLEKYHKYSYSALESGRPISDTQTNYEDYKRLKDNVEALQRSQRNLLGEDLAQMNTTELDQLENQLEVALKNIRSTKTQFMLDQLTDLQNREMALVETNNVLRSKLEELNNHSSEVALEDVGPTIHYNRFPSQSDHPFFQPVLGVNSNLQIGYNQSIHHDVNVGASSLTMQGFVSGWML	244

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst1g04105	244	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Arst1g04105	244	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Arst1g04105	244	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Arst1g04105	244	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Arst1g04105	244	SUPERFAMILY	SRF-like	2	77	IPR036879	GO:0003677\|GO:0046983
	Arst1g04105	244	CDD	MADS_MEF2_like	2	78	IPR033896	GO:0000977\|GO:0045944
	Arst1g04105	244	FunFam	MADS-box transcription factor 1	13	88	-	-
	Arst1g04105	244	Coils	Coil	84	114	-	-
	Arst1g04105	244	Pfam	K-box region	86	171	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Arst1g04105	244	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Arst1g04105	244	Gene3D	-	13	81	IPR036879	GO:0003677\|GO:0046983
	Arst1g04105	244	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Arst1g04105	244	ProSiteProfiles	K-box domain profile.	87	177	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Arst1g04105	244	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Arst1g04105	244	Coils	Coil	117	144	-	-
	Arst1g04105	244	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	172	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst1g04105	Arst-Chr1	103007094	103013970	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst1g04105	1	244	MADS-box Gene Family	AT5G15800	51.136	2.38e-80	240

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Arst1g04105		K-box	2.3e-26	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst1g04105	K09264		-	gmx:100804810	359.762

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Arst1g04105	1	103007094	103013970	Arst10g02792	10	94056558	94065944	ECH
	Arst4g03932	4	118006867	118012184	Arst1g04105	1	103007094	103013970	ECH
	Arst1g04105	1	103007094	103013970	Arst1g04105	1	103007094	103013970	ECH