Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g04103 ATGGGAAGGGGAAGAGTGCAGTTGAAGAGGATCGAGAACAAGATTAATAGGCAAGTCACGTTCTCAAAGAGAAGATCTGGTTTGCTGAAGAAGGCAAACGAAATCTCAGTGTTATGCGATGCCGAAGTCGCACTTATCGTCTTCTCCACCAAAGGCAAGCTCTTCGAATATTCCAGCGATCCCTGTATGGAAAGGATTCTTGAACGGTATGAGAGGTACTCATATGCGGAGAAGCAACTCATTTCAAATGATCAGCAGCCGCCAAATGAAAACTGGATACTAGAACACGCAAAGCTCAAGGCTAGGGTGGAAGTTCTACACAGAAATCAAAGGAATTTTATGGGGGAAGGTCTCGATACCCTAAGTCTGAAAGAACTTCAGAATTTGGAACACCAACTTGAATCCGCTCTCAAGCACATTAGATCACGAAAGAACCAAGTCATGTATGAATCTATTTCAGAGCTTCAGAAAAAGGATAAGGCACTCCAGGAACAAAACAATGTGCTCGCCAAGAAGGTGATGATAATGTTGTATTCTTTTTCATTAAAATTTCATTATTATTGTTGTTTGGATTTCAAAGAATTGGTGATGTGCCCTCTCTCCTTATAA 609 0.4122 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIVFSTKGKLFEYSSDPCMERILERYERYSYAEKQLISNDQQPPNENWILEHAKLKARVEVLHRNQRNFMGEGLDTLSLKELQNLEHQLESALKHIRSRKNQVMYESISELQKKDKALQEQNNVLAKKVMIMLYSFSLKFHYYCCLDFKELVMCPLSL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g04103 202 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Arst1g04103 202 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Arst1g04103 202 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst1g04103 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst1g04103 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst1g04103 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst1g04103 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Arst1g04103 202 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Arst1g04103 202 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Arst1g04103 202 Coils Coil 152 172 - -
Arst1g04103 202 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Arst1g04103 202 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Arst1g04103 202 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Arst1g04103 202 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst1g04103 202 Coils Coil 123 146 - -
Arst1g04103 202 Pfam K-box region 85 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g04103 Arst-Chr1 102963269 102968887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g04103 1 173 MADS-box Gene Family AT1G26310 69.540 5.91e-85 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst1g04103 K-box 3.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g04103 K09264 - gmx:100816836 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g04103 1 102963269 102968887 Arst10g02792 10 94056558 94065944 PCT