Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g04086 ATGTCAGGCGGAATGAGCGACGGCGACGGAGAATCAAAGTCCTCCCCAAACAAACGCCTCAAAACCGAAGAAGCATCGGAGAAGGTCGACGGTGGCGGAGTCGATGATAACCAGGGTGTATGGTGCGGGATCTGCTACGCGGAGCGCGGCGCACCGGTCGCCGGAGAAATCGACTGCTGCAGCCATTACTTTTGCTTCGCATGCATCATGGAGTGGTCCAAGCACGAGTCCCGATGCCCGATCTGCCGCCGGAGATTCTCCAACGTTCGCAGGCTCCCCAAGCATGGCATCTTCTCTTCTTCTCGGGACATTAAGGTCCCTCTCCGTGATCAGGTTTATCATCCTTATGGGAATATGAGCACCGGTCCTACTCACTCTCATACTGAGGCCAACTGCGTTGTCTGTCATGGTGTGGCAGATGAACATCTTCTGCTAATTTGTGATCTTTGCGATGCTTCTTCTCATACCTACTGTGTTGGCCTTGGCTACACTGTCCCTGAAGGCGATTGGTTTTGTTATGACTGTGCTATTGCCAGGGAGACCAATGAGCAGGAAGACTTAGAGCTACAAAATGTCGAGCAAAGTGGGGCGATAAGTGCAATACCATGTCCTTTACAACAAAGCCAATCCCCTCCTCCTCCTAGTATTCCATCAGCTGATAGGTTAAGTAGATACAGGGGAAAGAGGCCTCTGTCAAATGCCCAGCAGGTGCAGCGTAACATACAAGCGCTCCGTGATAATTGGAATGCACTGAGAAGTGGTTCCATGAAGTTCGGTTCTGGTTCCATTCAAACCAGTGGCATAGGTGGTTGTCATAATCGAGATTCTGGTTCTGCTTCATGTGGCAGACCCGACAAACAGCATTCTAATTCTATGGGTTTGGGAAGCCTAGGTTCCAGTTCTGGTTCTGTTTCACGCAGCAGATCAGATGAACAACATTCTAATTCTATGGTTTTGGCAAACAGGTGTTCTGGTTCCGTTTTGCATGGCAGATCAGACGAACAGCATTTTGATTGTATGGCTTCGCCAAGAATTCAGCACTCGAGTGTCCAAGATGGTTCATCTAGAGGCATAATGAATGAGAGGGGGATGAAAGATGTTGAGAAGGCTTGGAAAATGATGGAGAAGGCAAAGAAGATGCAAGGGACTCGTCAAAGAACCAACAGAAAATAG 1173 0.4919 MSGGMSDGDGESKSSPNKRLKTEEASEKVDGGGVDDNQGVWCGICYAERGAPVAGEIDCCSHYFCFACIMEWSKHESRCPICRRRFSNVRRLPKHGIFSSSRDIKVPLRDQVYHPYGNMSTGPTHSHTEANCVVCHGVADEHLLLICDLCDASSHTYCVGLGYTVPEGDWFCYDCAIARETNEQEDLELQNVEQSGAISAIPCPLQQSQSPPPPSIPSADRLSRYRGKRPLSNAQQVQRNIQALRDNWNALRSGSMKFGSGSIQTSGIGGCHNRDSGSASCGRPDKQHSNSMGLGSLGSSSGSVSRSRSDEQHSNSMVLANRCSGSVLHGRSDEQHFDCMASPRIQHSSVQDGSSRGIMNERGMKDVEKAWKMMEKAKKMQGTRQRTNRK 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g04086 390 SMART PHD_3 131 176 IPR001965 -
Arst1g04086 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 202 IPR013083 -
Arst1g04086 390 MobiDBLite consensus disorder prediction 1 32 - -
Arst1g04086 390 MobiDBLite consensus disorder prediction 265 318 - -
Arst1g04086 390 SUPERFAMILY RING/U-box 36 95 - -
Arst1g04086 390 SUPERFAMILY FYVE/PHD zinc finger 124 177 IPR011011 -
Arst1g04086 390 MobiDBLite consensus disorder prediction 280 318 - -
Arst1g04086 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 104 IPR013083 -
Arst1g04086 390 SMART ring_2 42 82 IPR001841 -
Arst1g04086 390 Pfam PHD-finger 132 176 IPR019787 -
Arst1g04086 390 PANTHER F18C1.6 PROTEIN 25 385 - -
Arst1g04086 390 ProSiteProfiles Zinc finger PHD-type profile. 129 178 IPR019787 -
Arst1g04086 390 MobiDBLite consensus disorder prediction 12 31 - -
Arst1g04086 390 MobiDBLite consensus disorder prediction 203 222 - -
Arst1g04086 390 ProSitePatterns Zinc finger RING-type signature. 60 69 IPR017907 -
Arst1g04086 390 ProSiteProfiles Zinc finger RING-type profile. 42 83 IPR001841 -
Arst1g04086 390 Pfam Ring finger domain 42 83 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g04086 Arst-Chr1 102714103 102716263 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g04086 101 188 C2H2 Transcription Factor Family AT3G01460 34.831 2.82e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Arst1g04086 PHD 4e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g04086 - - adu:107469006 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g04086 1 102714103 102716263 Arst1g04086 1 102714103 102716263 ECH