Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g04041 ATGGCAGAATCACCTGAAACAGAAGAAAAGTTTCAAGCTTCAACCATCTTTATGAACGAAACGAAGAAAAAGATGAAGAATAAGAATAAGAAGAAGCGGCCTCGGGATTCTGAATCAGAGAACCAATCAGCTGAACCTCAACAAGAAGAGGGCGCAGAATCCTTGGAAAACAATGCGAACAAGAAGAAGAAGAATAAGAAGTTGAAGGGAGTGGAAGAAGATAGCTACGTTGATAAAAATGGTGAAGAAGAAGAAGAAGAAAAGGAAGAAGAGAGGAAAGAGAAGAAGAATAAGGGTGGTGGCGGTGGAATAATGAGTAACGATGAATTCTCTTCTCTAGGGTTATCAGAACCAACTTCGAAGGCAATTCGGGATATGGGGTTCTCATACATGACTCAGATTCAATCAAGGGCAATTCCACATCTTCTAATAGGAAAAGATGTTCTTGGCGCTGCCAGAACCGGTTCCGGGAAAACCCTTGCTTTTCTGGTCCCTGCTGTGGAGCTTCTCTATAATGTTCAGTTCACGCCTCGTAATGGTGCTGGTGTTATTATCATTTGCCCCACCAGAGAGCTTGCAATTCAGACGCATGCTGTAGCCAAGGAACTCCTCAAGTATCATTCGCAGACTCTTGGATTGATTATTGGAGGTTCGACGAGAAAACTCGAAGCCGAACGCATTGCTAAAGGGGTCAATCTGCTCGTGGCAACTCCTGGTCGTCTTCTGGATCATCTTCAGAATACAAAAGGGTTCATATATAAAAACTTGAAGTGCCTCATGATCGATGAAGCTGACAGGATACTAGAAGCTAACTTTGAGGAAGAAATGAAGCAGATTATTAAGATCCTTCCAAAGAATAGGCAAACGGCTTTATTTTCGGCTACGCAAACAAAGAAGGTTGAGGATCTTGCACGCTTGTCATTTCAGACAACGCCTATATATATTGATGTAGATGATGGGAGAACCAAGGTTACAAATGAAGGGTTAATGCAGGGTTATGTTGTTGTTCCCTGTGCCAAGCGATTCATGGTTCTCTATTCCTTCTTGAAGAGATTTCATTCAAAAAAAGTGATGGTGTTTTTTTCTTCATGTAACTCTGTGAAATTCCATACAGACATTCTTAATCATATTCATTTGAATTGCTCAAGTATTCATGGAAAACAAAAGCAGCAGACCCGAACAACCACCTTCTTTGACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCTGTGGACTGGATTGTGCAGTATGATCCACCAGATGAACCGAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGAGAAGGTGGAAAAGGAAATGCTTTACTGTTCCTGATTCCTGAAGAATTACAATTTCTTCGTTATCTGAAGGCAGCTAAGGTCCCTGTGAAAGAGTATGGATATGATGAAAAGAAGGTGGCAAATGTACAATCTCACCTGGAGGATTTGGTAGTCAACAACTTTTTCCTAAACAAGATGGCTAAAGATGCGTATAGATCCTATCTATTGGCATACAATTCACATTCTATGAAGGATATATTCAATATACACCGCCTCGATCTGAAGGACGTAGCGGCTTCTTTCTGTCTTGCAAACCCACCAAATGTGACTCTGAACTTAAACAGCAGTAAGAAAAGGAAGAACATGCGCAGAGTTGATGGAAGTAGTCACAGCAGCCCTCATGGAAAAAGAAATTTTCATTCTAAAAAGCAATTTGTGAGGCATTAA 1770 0.4141 MAESPETEEKFQASTIFMNETKKKMKNKNKKKRPRDSESENQSAEPQQEEGAESLENNANKKKKNKKLKGVEEDSYVDKNGEEEEEEKEEERKEKKNKGGGGGIMSNDEFSSLGLSEPTSKAIRDMGFSYMTQIQSRAIPHLLIGKDVLGAARTGSGKTLAFLVPAVELLYNVQFTPRNGAGVIIICPTRELAIQTHAVAKELLKYHSQTLGLIIGGSTRKLEAERIAKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLMQGYVVVPCAKRFMVLYSFLKRFHSKKVMVFFSSCNSVKFHTDILNHIHLNCSSIHGKQKQQTRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYGYDEKKVANVQSHLEDLVVNNFFLNKMAKDAYRSYLLAYNSHSMKDIFNIHRLDLKDVAASFCLANPPNVTLNLNSSKKRKNMRRVDGSSHSSPHGKRNFHSKKQFVRH 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g04041 589 Pfam Helicase conserved C-terminal domain 344 448 IPR001650 -
Arst1g04041 589 SMART DUF4217_3 489 552 IPR025313 -
Arst1g04041 589 MobiDBLite consensus disorder prediction 560 574 - -
Arst1g04041 589 Gene3D - 325 568 IPR027417 -
Arst1g04041 589 MobiDBLite consensus disorder prediction 1 113 - -
Arst1g04041 589 SMART helicmild6 368 449 IPR001650 -
Arst1g04041 589 Pfam Domain of unknown function (DUF4217) 490 550 IPR025313 -
Arst1g04041 589 CDD SF2_C_DEAD 329 459 - -
Arst1g04041 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 470 IPR027417 -
Arst1g04041 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 139 314 IPR014001 -
Arst1g04041 589 FunFam RNA helicase 325 555 - -
Arst1g04041 589 CDD DEADc_DDX18 119 316 IPR044773 GO:0003724|GO:0005524
Arst1g04041 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 498 IPR001650 -
Arst1g04041 589 Pfam DEAD/DEAH box helicase 132 303 IPR011545 GO:0003676|GO:0005524
Arst1g04041 589 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 108 136 IPR014014 GO:0003724
Arst1g04041 589 MobiDBLite consensus disorder prediction 55 76 - -
Arst1g04041 589 Coils Coil 78 98 - -
Arst1g04041 589 PANTHER RNA HELICASE 53 494 - -
Arst1g04041 589 MobiDBLite consensus disorder prediction 553 589 - -
Arst1g04041 589 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 260 268 IPR000629 -
Arst1g04041 589 Gene3D - 53 318 IPR027417 -
Arst1g04041 589 SMART ultradead3 127 332 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g04041 Arst-Chr1 102166875 102171440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g04041 103 468 Eukaryotic Initiation Factors Gene Family AT3G19760 28.065 6.90e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g04041 K13179 - gmx:100797375 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g04041 1 102166875 102171440 Arst1g04041 1 102166875 102171440 ECH