Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g03980 ATGTCTCACGCCAACTGGGAAGCTGATAAAATGCTGGATGTGTATATCTATGATTATCTGATGAAGAGGCAGTTGCATGCTTCTGCCAGGGCATTCCAGGCCGAAGGAAATGTGTCGACCGACCCTGTTGCAATAGATGCGCCTAGTGGTTTTCTCTTCGAGTGGTGGTCTGTTTTCTGGGACATATATATTGCAAGGACCGATCAGAAACACTCAGAAGCAGCAGCAATTTATAGCAAGACCCAACAAAGTAAGGCTCGAGAACTGCAAAAACATCAAGAGCAAGAGCTTCAGAATCCAAATCAGAGACAACAAATGCAAATGCAGCTCTATATGCAGAGATATGCTCAGCAGCAGGAACAGGAGCAGCAGTTACAGGAGCAACGGCAGCAGCAGCTTAGGGCTCAGCTTGTTAGTGGCAGCAGTATCCGTCCTATTAACAATGATCCTTCAATCAGGCAGAAACGTGCAACTTCTAATGCTATGGCAACAAGAGTGTATGAGGACAGGTTGAAGTTGCCACTCCAGAGAGATGATTTAGATGATGTTGCTCTCAAGCAAAAGGGAAGTGGTAATGTTGGCCAGCTTCTGGACCCAAATCATGCCTCATTGTTGAAAGGAGTAGCAGTGACAACTGGTGGCCAGGCTACAGGTCAAACGTCTCTCGGTGCACCTAACATTTTACAAGGCAGTCTTCAACAAGTTCAAAATCAGAACCAGCATCTTCCAGGATCTCTGGACATGAAAAGTGATATGAATCCAATGGTTAGACCTCAAGCTGTTATACCAGATGGATCCTTTGTTGGTGGACATGGTTCAAATCAAGGTTGTAGCAATTTGACTCTGAAGGGATGGCCTCTAGCAGGACTGGATCAGCTTCGCTCAGAATTTCTTCAGCAGAATAATTTGATGCAGCCTCCACATTCTCTCAATCATCTTTCAGTGCAGCAGCAACTTATACTTCAGGCACAACAACATGCTGTAGGTTCCCCCTCTGCCACTGATTTTGAGAACAGAAGACTCAGGATGCTTCTTAATAATCCAAATATGGGTCTTGTGAAAGATGGACGACCGAATTCAGCATATGACTCAATTCCTAATGTGTTGGCTGCACAAGTGTGTTCTCCGATGTTGACTCATCCGGATACAGATATGTTCCTTAAGCAACAAATGCAAAACAGCAGTCACCAGCTTCAACAACATCTGCAGCATCCTCCTTCAAACCAGCAGTTGCAGAATCTCCAGCGGCAAGGAAAAATTGGTTCCGGGAGCAATACACAAGATGGGTGCATGTCCACCTTACAAGGAAATGATCAGGCTTCCAAAACTCAAGTTGGCCGAAAGCGAAAGCAAGCATCATCTTCTGGTCCTGCCAATAGTTCTGGAACAGCAACCACCACAGGACCATCTACCAGTTCACCTTCAACACCATCTACACAAACGCTCGGAGATGTGCCAAATCTGCAACAGAATGTTCCATCTTCCAAGTCATTGCTTATGTTTGGTACTGATAGCTTGGGATCACTTACATCGGCCCAAAATCAACTGGCTGATATGGACTGCCTTATTGGTGACGGAACTTTCAGTGACAATGTTGAGTCGCTCTTTTCTGCTGATGATGCAGACCCTAGAGATAAGATTGGCAAAGAATTCTCATTCAAAGAGACTAAATGTGTTATGGCAAGCACACATAAAGTTGAGTGTTGCCACTTCTCATCAGATGGAAAACTGTTTGCTACTGGTGGCCATGATAAAAAGGTATCTTTGTGGTGCACAGAATCGTTTAACCTGAAGTCGACACTAGATGAACATACTCAGTTGATAACCGATGTTCGATTTAGTTCTTCAAGGACATCGCGCCTTGCTACATCCTCAGCTGACAAAACTGTTCGGATTTGGGATACTGAAAATCCTGGTTATTCTCTTCGAACATTCACAGGACATGGTTCAACTGTGATGTCACTAGACTTTCACCCTAGTAAAGACGACCTTATTTTCTCTTGTGACAATAATGAGATAAGATACTGGAGTATTAAAAACGATGGTTGTGCTGGGGTTTACAAGGGTGGCGTAACTCAGATGAGATTTCAACCTCGTTTGGGAAGGCTTCTTGCAGCTGCGGTAGATAATCTCATTTCCATTATTGATGTAGAAACCCTCGGTTGCACACTCAAATTACAGTTCTGGAAAATATCTAGCATCTCTTAG 2208 0.4416 MSHANWEADKMLDVYIYDYLMKRQLHASARAFQAEGNVSTDPVAIDAPSGFLFEWWSVFWDIYIARTDQKHSEAAAIYSKTQQSKARELQKHQEQELQNPNQRQQMQMQLYMQRYAQQQEQEQQLQEQRQQQLRAQLVSGSSIRPINNDPSIRQKRATSNAMATRVYEDRLKLPLQRDDLDDVALKQKGSGNVGQLLDPNHASLLKGVAVTTGGQATGQTSLGAPNILQGSLQQVQNQNQHLPGSLDMKSDMNPMVRPQAVIPDGSFVGGHGSNQGCSNLTLKGWPLAGLDQLRSEFLQQNNLMQPPHSLNHLSVQQQLILQAQQHAVGSPSATDFENRRLRMLLNNPNMGLVKDGRPNSAYDSIPNVLAAQVCSPMLTHPDTDMFLKQQMQNSSHQLQQHLQHPPSNQQLQNLQRQGKIGSGSNTQDGCMSTLQGNDQASKTQVGRKRKQASSSGPANSSGTATTTGPSTSSPSTPSTQTLGDVPNLQQNVPSSKSLLMFGTDSLGSLTSAQNQLADMDCLIGDGTFSDNVESLFSADDADPRDKIGKEFSFKETKCVMASTHKVECCHFSSDGKLFATGGHDKKVSLWCTESFNLKSTLDEHTQLITDVRFSSSRTSRLATSSADKTVRIWDTENPGYSLRTFTGHGSTVMSLDFHPSKDDLIFSCDNNEIRYWSIKNDGCAGVYKGGVTQMRFQPRLGRLLAAAVDNLISIIDVETLGCTLKLQFWKISSIS 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g03980 735 ProSitePatterns Trp-Asp (WD) repeats signature. 621 635 IPR019775 -
Arst1g03980 735 Coils Coil 101 136 - -
Arst1g03980 735 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 645 680 - -
Arst1g03980 735 MobiDBLite consensus disorder prediction 83 103 - -
Arst1g03980 735 ProSiteProfiles Trp-Asp (WD) repeats profile. 645 680 IPR001680 GO:0005515
Arst1g03980 735 Pfam WD domain, G-beta repeat 562 590 IPR001680 GO:0005515
Arst1g03980 735 Pfam WD domain, G-beta repeat 641 677 IPR001680 GO:0005515
Arst1g03980 735 Pfam WD domain, G-beta repeat 597 634 IPR001680 GO:0005515
Arst1g03980 735 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 601 637 - -
Arst1g03980 735 SMART Lish 8 40 IPR006594 GO:0005515
Arst1g03980 735 SMART WD40_4 594 634 IPR001680 GO:0005515
Arst1g03980 735 SMART WD40_4 552 591 IPR001680 GO:0005515
Arst1g03980 735 SMART WD40_4 680 716 IPR001680 GO:0005515
Arst1g03980 735 SMART WD40_4 638 677 IPR001680 GO:0005515
Arst1g03980 735 SUPERFAMILY WD40 repeat-like 551 728 IPR036322 GO:0005515
Arst1g03980 735 ProSiteProfiles Trp-Asp (WD) repeats profile. 559 590 IPR001680 GO:0005515
Arst1g03980 735 PANTHER TRANSCRIPTION ACTIVATOR MSS11 90 727 - -
Arst1g03980 735 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Arst1g03980 735 MobiDBLite consensus disorder prediction 412 491 - -
Arst1g03980 735 Pfam LisH 10 36 IPR006594 GO:0005515
Arst1g03980 735 Gene3D - 544 734 IPR015943 GO:0005515
Arst1g03980 735 ProSiteProfiles Trp-Asp (WD) repeats profile. 601 637 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g03980 Arst-Chr1 101356028 101361889 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g03980 525 722 Miscellaneous Gene Families AT5G08390 25.000 1.95e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Arst1g03980 WD40 0.0041 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g03980 - - aip:107624271 1054.28