Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g03978 ATGTCTCACGCCAACTGGGAAGCTGATAAAATGCTGGATGTGTATATCTATGATTATCTGATGAAGAGGCAGTTGCATGCTTCTGCCAGGGCATTCCAGGCCGAAGGAAATGTGTCGACCGACCCTGTTGATGCGCCTAGTGGTTTTCTCTTCGAGTGGTGGTCTGTTTTCTGGGACATATATATTGCAAGGACCGATCAGAAACACTCAGAAGCAGCAGCAATTTATAGCAAGACCCAACAAAGTAAGGCTCGAGAACTGCAAAAACATCAAGAGCAAGAGCTTCAGAATCCAAATCAGAGACAACAAATGCAAATGCAGCTCTATATGCAGAGATATGCTCAGCAGCAGGAACAGGAGCAGCAGTTACAGGAGCAACGGCAGCAGCAGCTTAGGGCTCAGCTTGTTAGTGGCAGCAGTATCCGTCCTATTAACAATGATCCTTCAATCAGGCAGAAACGTGCAACTTCTAATGCTATGGCAACAAGAGTGTATGAGGACAGGTTGAAGTTGCCACTCCAGAGAGATGATTTAGATGATGTTGCTCTCAAGCAAAAGGGAAGTGGTAATGTTGGCCAGCTTCTGGACCCAAATCATGCCTCATTGTTGAAAGGAGTAGCAGTGACAACTGGTGGCCAGGCTACAGGTCAAACGTCTCTCGGTGCACCTAACATTTTACAAGGCAGTCTTCAACAAGTTCAAAATCAGAACCAGCATCTTCCAGGATCTCTGGACATGAAAAGTGATATGAATCCAATGGTTAGACCTCAAGCTGTTATACCAGATGGATCCTTTGTTGGTGGACATGGTTCAAATCAAGGTTGTAGCAATTTGACTCTGAAGGGATGGCCTCTAGCAGGACTGGATCAGCTTCGCTCAGAATTTCTTCAGCAGAATAATTTGATGCAGCCTCCACATTCTCTCAATCATCTTTCAGTGCAGCAGCAACTTATACTTCAGGCACAACAACATGCTGTAGGTTCCCCCTCTGCCACTGATTTTGAGAACAGAAGACTCAGGATGCTTCTTAATAATCCAAATATGGGTCTTGTGAAAGATGGACGACCGAATTCAGCATATGACTCAATTCCTAATGTGTTGGCTGCACAAGTGTGTTCTCCGATGTTGACTCATCCGGATACAGATATGTTCCTTAAGCAACAAATGCAAAACAGCAGTCACCAGCTTCAACAACATCTGCAGCATCCTCCTTCAAACCAGCAGTTGCAGAATCTCCAGCGGCAAGGAAAAATTGGTTCCGGGAGCAATACACAAGATGGGTGCATGTCCACCTTACAAGGAAATGATCAGGCTTCCAAAACTCAAGTTGGCCGAAAGCGAAAGCAAGCATCATCTTCTGGTCCTGCCAATAGTTCTGGAACAGCAACCACCACAGGACCATCTACCAGTTCACCTTCAACACCATCTACACAAACGCTCGGAGATGTGCCAAATCTGCAACAGAATGTTCCATCTTCCAAGTCATTGCTTATGTTTGGTACTGATAGCTTGGGATCACTTACATCGGCCCAAAATCAACTGGCTGATATGGACTGCCTTATTGGTGACGGAACTTTCAGTGACAATGTTGAGTCGCTCTTTTCTGCTGATGATGCAGACCCTAGAGATAAGATTGGCAAAGAATTCTCATTCAAAGAGACTAAATGTGTTATGGCAAGCACACATAAAGTTGAGTGTTGCCACTTCTCATCAGATGGAAAACTGTTTGCTACTGGTGGCCATGATAAAAAGGTATCTTTGTGGTGCACAGAATCGTTTAACCTGAAGTCGACACTAGATGAACATACTCAGTTGATAACCGATGTTCGATTTAGTTCTTCAAGGACATCGCGCCTTGCTACATCCTCAGCTGACAAAACTGTTCGGATTTGGGATACTGAAAATCCTGGTTATTCTCTTCGAACATTCACAGGACATGGTTCAACTGTGATGTCACTAGACTTTCACCCTAGTAAAGACGACCTTATTTTCTCTTGTGACAATAATGAGATAAGATACTGGAGTATTAAAAACGATGGTTGTGCTGGGGTTTACAAGGGTGGCGTAACTCAGATGAGATTTCAACCTCGTTTGGGAAGGCTTCTTGCAGCTGCGGTAGATAATCTCATTTCCATTATTGATGTAGAAACCCTCGGTTGCACACTCAAATTACAGGGCCATAATAACCTTGTCCGTTCGGTTTGCTGGAACAGTTCTGGAAAATATCTAGCATCTCTTAGTGATGATCTTGTTAGGGTATGGACAGTTGGATCAAGTAGCAAAGGGGAGTGCATTCATGAACTCAATGCATCCAGGAACAAATTCAACACCTGTGCCTTCCACCCCTTCTATCCTTTTCTGATCATTGGCTGCAATGAAGCAATTGAGCTGTGGGACTTTGTTCAGAACAAGACATTGACACTGGCTGCTCATGAAAAGCTTGTATCATCCTTGGCAGTATCTAGTGTTAATGGTTTGGTTGCTTCAACTAGTCATGACAAGCATTTCAAGATCTGGAACTGA 2523 0.4411 MSHANWEADKMLDVYIYDYLMKRQLHASARAFQAEGNVSTDPVDAPSGFLFEWWSVFWDIYIARTDQKHSEAAAIYSKTQQSKARELQKHQEQELQNPNQRQQMQMQLYMQRYAQQQEQEQQLQEQRQQQLRAQLVSGSSIRPINNDPSIRQKRATSNAMATRVYEDRLKLPLQRDDLDDVALKQKGSGNVGQLLDPNHASLLKGVAVTTGGQATGQTSLGAPNILQGSLQQVQNQNQHLPGSLDMKSDMNPMVRPQAVIPDGSFVGGHGSNQGCSNLTLKGWPLAGLDQLRSEFLQQNNLMQPPHSLNHLSVQQQLILQAQQHAVGSPSATDFENRRLRMLLNNPNMGLVKDGRPNSAYDSIPNVLAAQVCSPMLTHPDTDMFLKQQMQNSSHQLQQHLQHPPSNQQLQNLQRQGKIGSGSNTQDGCMSTLQGNDQASKTQVGRKRKQASSSGPANSSGTATTTGPSTSSPSTPSTQTLGDVPNLQQNVPSSKSLLMFGTDSLGSLTSAQNQLADMDCLIGDGTFSDNVESLFSADDADPRDKIGKEFSFKETKCVMASTHKVECCHFSSDGKLFATGGHDKKVSLWCTESFNLKSTLDEHTQLITDVRFSSSRTSRLATSSADKTVRIWDTENPGYSLRTFTGHGSTVMSLDFHPSKDDLIFSCDNNEIRYWSIKNDGCAGVYKGGVTQMRFQPRLGRLLAAAVDNLISIIDVETLGCTLKLQGHNNLVRSVCWNSSGKYLASLSDDLVRVWTVGSSSKGECIHELNASRNKFNTCAFHPFYPFLIIGCNEAIELWDFVQNKTLTLAAHEKLVSSLAVSSVNGLVASTSHDKHFKIWN 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g03978 840 CDD WD40 553 840 - -
Arst1g03978 840 ProSiteProfiles Trp-Asp (WD) repeats profile. 557 588 IPR001680 GO:0005515
Arst1g03978 840 ProSiteProfiles Trp-Asp (WD) repeats profile. 599 635 IPR001680 GO:0005515
Arst1g03978 840 Pfam LisH 10 36 IPR006594 GO:0005515
Arst1g03978 840 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 808 840 - -
Arst1g03978 840 ProSitePatterns Trp-Asp (WD) repeats signature. 619 633 IPR019775 -
Arst1g03978 840 PANTHER TRANSCRIPTION ACTIVATOR MSS11 88 840 - -
Arst1g03978 840 MobiDBLite consensus disorder prediction 410 489 - -
Arst1g03978 840 Gene3D - 684 840 IPR015943 GO:0005515
Arst1g03978 840 SMART WD40_4 801 840 IPR001680 GO:0005515
Arst1g03978 840 SMART WD40_4 636 675 IPR001680 GO:0005515
Arst1g03978 840 SMART WD40_4 550 589 IPR001680 GO:0005515
Arst1g03978 840 SMART WD40_4 717 755 IPR001680 GO:0005515
Arst1g03978 840 SMART WD40_4 592 632 IPR001680 GO:0005515
Arst1g03978 840 SMART WD40_4 678 714 IPR001680 GO:0005515
Arst1g03978 840 SMART WD40_4 761 799 IPR001680 GO:0005515
Arst1g03978 840 SMART Lish 8 40 IPR006594 GO:0005515
Arst1g03978 840 SUPERFAMILY WD40 repeat-like 562 840 IPR036322 GO:0005515
Arst1g03978 840 Pfam WD domain, G-beta repeat 720 754 IPR001680 GO:0005515
Arst1g03978 840 Pfam WD domain, G-beta repeat 805 840 IPR001680 GO:0005515
Arst1g03978 840 Pfam WD domain, G-beta repeat 560 588 IPR001680 GO:0005515
Arst1g03978 840 Pfam WD domain, G-beta repeat 639 675 IPR001680 GO:0005515
Arst1g03978 840 Pfam WD domain, G-beta repeat 595 632 IPR001680 GO:0005515
Arst1g03978 840 ProSiteProfiles Trp-Asp (WD) repeats profile. 724 756 IPR001680 GO:0005515
Arst1g03978 840 Coils Coil 99 134 - -
Arst1g03978 840 ProSiteProfiles Trp-Asp (WD) repeats profile. 808 840 IPR001680 GO:0005515
Arst1g03978 840 MobiDBLite consensus disorder prediction 81 101 - -
Arst1g03978 840 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Arst1g03978 840 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 643 678 - -
Arst1g03978 840 ProSiteProfiles Trp-Asp (WD) repeats profile. 643 678 IPR001680 GO:0005515
Arst1g03978 840 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 599 635 - -
Arst1g03978 840 Gene3D - 525 683 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g03978 Arst-Chr1 101356028 101362562 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g03978 637 840 Miscellaneous Gene Families AT5G08390 25.592 5.68e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Arst1g03978 WD40 0.014 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g03978 - - aip:107624271 1290.79