LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst1g03935	ATGGCTACCACCATCATCACCACACCCTCAAGAGATAATAATAATGAACCTGACTACGACAGCAGCTCCTCCTCCGTCACCACCACCACCACCCTCCCTGAATCCACCCGCAGCTGGATGAGCAACCTCAGCTTCAGCAGCCTCCGCCGCCAGAGCTCTGTCTCTGTTTTCTCCTCGTCCTCCGCCATCACAGACACCCCTTTGTTTCTGACTTCTTCTTCTCTCCAAAGCAAGCCGCACAAGGCGAACCAAGTTGCATGGGAGGCCATGCAGCGGCTCCTCAGCCACCACGGGCGCGTGGGGCTCGACCACTTCCGGTTGCTGAGGCGGCTGGGGAGCGGCGACATAGGGAACGTGTACCTTTGCCAGATAAGGAACCCGGTGGTGGGGCTTCCGCAGTGCTTCTACGCCATGAAGGTTGTGGACAGAGAAGCACTTGCCATAAGGAAGAAGCTTCATAGAGCGGAGATGGAGAAGGAGATTCTTGGAATGCTTGATCACCCTTTCTTGCCAACTTTGTACACTCAGTTTGAAGCTTCTCACTACTCTTGCTTGCTCATGGAGTTCTGCCCCGGCGGCGATTTATACGCCGCTCGACAACGCCAGCCCGGCAAGCGCTTCTCCATTGCTTCCGCTAAGTTCTATGGAGCGGAGACACTTTTGGCGGTAGAATATCTTCACATGATGGGGATAGTGTACAGGGATTTGAAGCCGGAGAACGTTCTGGTGAGGGAAGACGGCCACATAATGCTATCGGATTTCGATCTCTCTCTCAAATGCGACGTCGTTCCCAAGCTCCTAAGGACCAAAACTACCACCAGATTGGAACGCACCATTAAGTCCACAAAGACCAGATCCTGCGCCACCGCACCCATCCAACCAGTACTCTCATGCTTCTCCCTATCTTCATCAAGAAACAAGAAACGTTCCCCGACCGTTACAACCGTCATAACAGAAAACGCTAACCACGTTCAAGAACTCGATCCAGAGCTCGTAGCGGAGCCAATAGAAGCAAGGTCGAAATCGTTCGTGGGAACGCACGAGTATTTGGCGCCGGAAGTGATCTTAGGTCAAGGCCATGGCAGCGCCGTGGATTGGTGGACTTTCGGAGTGTTCTTGTATGAGATGCTGTACGGAAGAACGCCGTTCAAAGGCGAGAATAATGAGAAGACGCTGTTGAATATTCTCAAGATGCCGTTGGTTTTTCCAAGGATTGCGGTTACTAGTAGCAAGGAGTATGAGGAGATGGTGAAGGTTCAAGATCTTATAAGCAAGCTTTTGGTGAAGAATCCAAACAAGAGGATTGGCAGTTGCATGGGTTCTCTTGAGATTAAGAGGCATGACTTCTTTAAGCCTGTTAATTGGGCTTTGATTAGGTCTATTAAGCCACCCGAGGTGCCTAATCATATCAATAATAACATCCTTAGGAGTAGGGTTTTCATGCCTAGTAGATTAACCAAGAAAGAAAGAGATCAACCCTATAAGCTTAGTCATCATCATTTTGAATACTTCTAA	1515	0.501	MATTIITTPSRDNNNEPDYDSSSSSVTTTTTLPESTRSWMSNLSFSSLRRQSSVSVFSSSSAITDTPLFLTSSSLQSKPHKANQVAWEAMQRLLSHHGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPVVGLPQCFYAMKVVDREALAIRKKLHRAEMEKEILGMLDHPFLPTLYTQFEASHYSCLLMEFCPGGDLYAARQRQPGKRFSIASAKFYGAETLLAVEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSLKCDVVPKLLRTKTTTRLERTIKSTKTRSCATAPIQPVLSCFSLSSSRNKKRSPTVTTVITENANHVQELDPELVAEPIEARSKSFVGTHEYLAPEVILGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLLNILKMPLVFPRIAVTSSKEYEEMVKVQDLISKLLVKNPNKRIGSCMGSLEIKRHDFFKPVNWALIRSIKPPEVPNHINNNILRSRVFMPSRLTKKERDQPYKLSHHHFEYF	504

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Arst1g03935	504	FunFam	protein kinase PINOID	190	258	-	-
Arst1g03935	504	Gene3D	Phosphorylase Kinase; domain 1	103	189	-	-
Arst1g03935	504	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	231	243	IPR008271	GO:0004672\|GO:0006468
Arst1g03935	504	CDD	STKc_phototropin_like	103	467	-	-
Arst1g03935	504	MobiDBLite	consensus disorder prediction	1	33	-	-
Arst1g03935	504	Gene3D	Transferase(Phosphotransferase) domain 1	323	468	-	-
Arst1g03935	504	Gene3D	Transferase(Phosphotransferase) domain 1	190	259	-	-
Arst1g03935	504	SMART	serkin_6	105	450	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Arst1g03935	504	FunFam	protein kinase PINOID 2	103	189	-	-
Arst1g03935	504	FunFam	serine/threonine-protein kinase D6PK-like	338	468	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst1g03935	Arst-Chr1	100787800	100789597	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst1g03935	14	504	AGC Kinase Gene Family	AT2G26700	58.627	0.0	592

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Arst1g03935		Pkinase	1.6e-30	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst1g03935	K08286		-	gmx:100777988	726.472

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Arst1g03935	1	100787800	100789597	Arst1g03935	1	100787800	100789597	ECH
	Arst1g03935	1	100787800	100789597	Arst4g01012	4	8528417	8533631	PCT

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