Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Arst1g03880 | ATGGCTGCAGCAGAGGCAGCTCAAGCTGCCGCTGGTCCACGGTATGCACCTGATGATCCCACCCTTCCTACGCCATGGAAGGGGCTAATTGATGGAAGCACTGGTCTTTTGTACTACTGGAACCCTGAAACTAATGTCACCCAGTATGAGAAACCTCCCCCTTTGCCGTCGGGCCCTGCTCCGGCTGCTTCTACACCCAACATGGCGCCCATACCCGTGGCTCATGCGATGCAATCCGGTGGGATGATGGGGCAGCATGGGCAGCAAATGCTTCAGTCCTCTCAACAGCAAGGGAGTAACCTTGCTCAGCAACATGGGCAAATGATGCCACAACAGCAGAGTTCGCATGTGGCATCTCAGCAGAAGCCATCTCCGGTTGCACAAGGGGTGCAACAGCAGAATTTGCAGTTGGCACAGTCCATGCCACAACCAGGGTTTAATCAGGCTGGACAGCATTCATTGCCACATCAGGGACAGCATTCAATGCAGCCTCAGGGACAGTATCCCATGCAACCCCAAGGGCAACAAATGGTCCAGCCTAAAGGGCAGCAGATGACACAACAACCACATCAGATGCATTATCAGATGCAGCCCCAAGGTATCAATGCCCAACATTTTGGTCAAGGAGCATCTCAGGCTCAGGGCTCACATTCTGTGCAACCACAAGCACATCAATTCGCCCCCCAGAGCATGCATTATATGCCATATCAGCCAAACATGCCTCAACCTGTGCAGCCAAGTTCCCAGCATAACATGCATGGTCATTCTTATGAAAACCAACAAGACTTCAAATCAGCATTCCCAAAGAGTAGATCCGGACCATCTGGGCAAGTGCCAGATGGAGGTGCAAATGCTGGTCACTCAAAACAGTTTGGTGGCGCACCAGGAAGCATACAACAGTCTCCCTCTGCAGTGCCATTACAACAGGGTAGTTCTTATCCAGTTTACCAACATGGTCCTAGCTTTCAAAACCAGATGGGGCCTGGTATGATGCATGGTCATCCACCCAATGTCCATCCTGGAAGCCAAAAGATGGGACATGCAGATAATTTTCATGGTAGAGCTGGGAATGAATATTACTATAACTCTAGCAAAGAGATGCCAGCTATGGGTCCTCAGCAGCCAAATATTGCACCAATACCCATTTCAACAAAGCAGCAGGATATGAGAATGGGCAGCGGCCCTTTTCAAAATGTAATGCCTAGTGGAAATGGAAGTGGTATCCCAGGTCATCCAATGCACATGTTTCCACCAGTAGGAGGGCATCCGCCTCTCTCAAGTAACTCCTTGAAAGGACCTCCTTATATGGGATCTTCAGATGTTACTGATATGACACCTGCTGAAATTTATTGTCAGCAACATGAAGTTACAGCAACGGGTGACAACATTCCACCTCCTTTTATGACATTTGATGCTACTGGATTTCCTCCAGAGATTTTGAGAGAGATATATTCTGCTGGCTTCTCAAACCCAACACCAATTCAGGCTCAAACTTGGCCAGTAGCACTGCAAGGTAGGGACATAGTGGCAATTGCAAAAACAGGCTCTGGCAAAACATTGGGCTACTTAATGCCTGCATTCATCCTTCTTAGGCAGAGAAGGAATAATCCTTTGAATGGCCCCACTGTCTTGGTTTTAGCTCCAACACGTGAACTTGCTACACAGATCCAAGATGAGGCTGTCAAATTTGGAAGATCTTCACGTTTCTCTTGCACGTGTTTGTATGGTGGAGCACCCAAAGCCCAACAGCTAAAAGAGTTAGATCGGGGAGCAGACATTGTTGTTGCCACACCTGGCCGACTCAATGACATCCTTGAAATGAAGAAAATTGACTTTGGGCAAGTTTCACTGCTTGTGCTCGATGAGGCTGACCGTATGCTTGACATGGGTTTTGAACCTCAAATCCGGAAAATTGTTAATGAGATTCCACCACGTAGGCAAACTCTCATGTATACGGCAACATGGCCAAAAGAAGTAAGAAAAATTGCCAGTGACCTGCTCGTTAATCCTGTTCAGGTTAACATTGGAAGTGTTGATGAGCTTGCCGCAAATAAAGCTATCACACAGTATGTTGAATTTGTCCCTCAAATGGAGAAGCAGAGGCGATTAGAGCAGATCCTCAGATCCCAAGAGCGGGGCTCTAAGGTTATTATATTTTGTTCCACAAAGAGGTTATGTGATCAGCTTGCCCGTAGTATTGGTCGCAATTATGGGGCTGCTGCAATTCATGGTGACAAGTCTCAAAGTGAGAGGGATTGGGTTTTAAATCAGTTCCGGAGTGGGAAGTCACCAGTTTTAGTTGCCACTGATGTTGCTGCTCGTGGGCTTGACATCAAGGATATAAGGGTGGTTATAAACTATGATTTCCCTACTGGAGTTGAGGATTATGTACACCGAATTGGAAGAACTGGACGGGCAGGTGCTACTGGAGTATCGTACACCTTTTTCTCGGAGCAGGACTGGAAACATGCATCTGATTTAATCAAAGTCTTGGAGGGTGCAAACCAGCATGTGCCTCCAGAGCTAAGACAGATGACCTTGCGCGGACCACCAAACTTTGGAAAAGAGCGGGGTGGGATGAGTCGTTTCGACTCTGGTGGTGGTGGGCGTTGGGATAATGGTGGTCGTGGTGGCATGAGGGATGGGGGCTTTGGTGGTCGTGGTGGCATGAGAGATGGTGGCTTTAGTGGTCGGGGCGGCATGAGGGATGGTAACTTTGGTGGCCGAGGTGGCATGAGGGAGAGTGGATTCAGCAATGATGGTGGCATGAGAGATGGTGGCTTTGGTGCTCATGGTGCTAGCGGTCAAGGTGGGAGAGGTGATATGTTTGGTGGTAGGGGAAATAGAGGTCGAGGATTTGGTGGCCCTCGTGGTGGTCATGCTGGGTGGGGTAGAGGGGATCGTGGTCCAAATGACCGATTCAACATGGATGGAAGAGGAAGAGGGCGAGGACGTGGGCGATTAGACAACAGAAGAGATGTTGGATACAGGAGTAGAGGCAGAAGCCGTAGCCGTAGCCCAGAGAGAGTACGAACATGGGACTATAGTAGCAGAAGTCGTAGTAGGAGTCGCAGCAGTAGGAGCTGGAGCCGGAGCCGGAGCCGAAGCCGAAGCAGAAGCCGCAGTTGGTCGCGTGGTCGCAGTCGGAGTCGCAGCTATAGCCCTAGCCCTCGTCGGAGTCGAAGCCGCAGTCGTAGTGGTCGCAGTTACAGCCGCAGCCGCAGCCGAAGTCCCCGTAGAAGTCCCAGCTATGATAGGCGTGATAGGACAGATCAACACCATTCTGATCAAAAGGATTATAGAGAACCAGAGGTCCAAGCTCCCAATCCGGGAGTGTCTCCAAGCTCCCAAGGGCAGCAGAATTCAATTTTGGGAACTGATCAAGTGGATCAGGCGCCACTGGTTGCTGGGAGCGGTGACCCAGAAGATCCCAATGCTCTGGCATAG | 3447 | 0.4996 | MAAAEAAQAAAGPRYAPDDPTLPTPWKGLIDGSTGLLYYWNPETNVTQYEKPPPLPSGPAPAASTPNMAPIPVAHAMQSGGMMGQHGQQMLQSSQQQGSNLAQQHGQMMPQQQSSHVASQQKPSPVAQGVQQQNLQLAQSMPQPGFNQAGQHSLPHQGQHSMQPQGQYPMQPQGQQMVQPKGQQMTQQPHQMHYQMQPQGINAQHFGQGASQAQGSHSVQPQAHQFAPQSMHYMPYQPNMPQPVQPSSQHNMHGHSYENQQDFKSAFPKSXRSGPSGQVPDGGANAGHSKQFGGAPGSIQQSPSAVPLQQGSSYPVYQHGPSFQNQMGPGMMHGHPPNVHPGSQKMGHADNFHGRAGNEYYYNSSKEMPAMGPQQPNIAPIPISTKQQDMRMGSGPFQNVMPSGNGSGIPGHPMHMFPPVGGHPPLSSNSLKGPPYMGSSDVTDMTPAEIYCQQHEVTATGDNIPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNPLNGPTVLVLAPTRELATQIQDEAVKFGRSSRFSCTCLYGGAPKAQQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDELAANKAITQYVEFVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARSIGRNYGAAAIHGDKSQSERDWVLNQFRSGKSPVLVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVSYTFFSEQDWKHASDLIKVLEGANQHVPPELRQMTLRGPPNFGKERGGMSRFDSGGGGRWDNGGRGGMRDGGFGGRGGMRDGGFSGRGGMRDGNFGGRGGMRESGFSNDGGMRDGGFGAHGASGQGGRGDMFGGRGNRGRGFGGPRGGHAGWGRGDRGPNDRFNMDGRGRGRGRGRLDNRRDVGYRSRGRSRSRSPERVRTWDYSSRSRSRSRSSRSWSRSRSRSRSRSRSWSRGRSRSRSYSPSPRRSRSRSRSGRSYSRSRSRSPRRSPSYDRRDRTDQHHSDQKDYREPEVQAPNPGVSPSSQGQQNSILGTDQVDQAPLVAGSGDPEDPNALA | 1149 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Arst1g03880 | 1149 | MobiDBLite | consensus disorder prediction | 1041 | 1076 | - | - | |
Arst1g03880 | 1149 | ProSitePatterns | WW/rsp5/WWP domain signature. | 26 | 52 | IPR001202 | GO:0005515 | |
Arst1g03880 | 1149 | MobiDBLite | consensus disorder prediction | 967 | 1006 | - | - | |
Arst1g03880 | 1149 | MobiDBLite | consensus disorder prediction | 243 | 267 | - | - | |
Arst1g03880 | 1149 | CDD | SF2_C_DEAD | 688 | 817 | - | - | |
Arst1g03880 | 1149 | MobiDBLite | consensus disorder prediction | 82 | 227 | - | - | |
Arst1g03880 | 1149 | SMART | helicmild6 | 724 | 808 | IPR001650 | - | |
Arst1g03880 | 1149 | SMART | ultradead3 | 488 | 691 | IPR014001 | - | |
Arst1g03880 | 1149 | MobiDBLite | consensus disorder prediction | 1041 | 1149 | - | - | |
Arst1g03880 | 1149 | MobiDBLite | consensus disorder prediction | 46 | 439 | - | - | |
Arst1g03880 | 1149 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 500 | 674 | IPR014001 | - | |
Arst1g03880 | 1149 | MobiDBLite | consensus disorder prediction | 1079 | 1104 | - | - | |
Arst1g03880 | 1149 | MobiDBLite | consensus disorder prediction | 844 | 1006 | - | - | |
Arst1g03880 | 1149 | MobiDBLite | consensus disorder prediction | 378 | 405 | - | - | |
Arst1g03880 | 1149 | SMART | ww_5 | 21 | 54 | IPR001202 | GO:0005515 | |
Arst1g03880 | 1149 | Gene3D | - | 444 | 678 | IPR027417 | - | |
Arst1g03880 | 1149 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Arst1g03880 | 1149 | CDD | WW | 23 | 51 | IPR001202 | GO:0005515 | |
Arst1g03880 | 1149 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 444 | 847 | - | - | |
Arst1g03880 | 1149 | Pfam | WW domain | 22 | 52 | IPR001202 | GO:0005515 | |
Arst1g03880 | 1149 | Gene3D | - | 679 | 849 | IPR027417 | - | |
Arst1g03880 | 1149 | FunFam | ATP-dependent RNA helicase RhlB | 678 | 850 | - | - | |
Arst1g03880 | 1149 | MobiDBLite | consensus disorder prediction | 294 | 325 | - | - | |
Arst1g03880 | 1149 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 703 | 847 | IPR001650 | - | |
Arst1g03880 | 1149 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 469 | 497 | IPR014014 | GO:0003724 | |
Arst1g03880 | 1149 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 20 | 54 | IPR001202 | GO:0005515 | |
Arst1g03880 | 1149 | SUPERFAMILY | WW domain | 14 | 52 | IPR036020 | GO:0005515 | |
Arst1g03880 | 1149 | MobiDBLite | consensus disorder prediction | 1110 | 1129 | - | - | |
Arst1g03880 | 1149 | Pfam | Helicase conserved C-terminal domain | 700 | 808 | IPR001650 | - | |
Arst1g03880 | 1149 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 620 | 628 | IPR000629 | - | |
Arst1g03880 | 1149 | MobiDBLite | consensus disorder prediction | 52 | 66 | - | - | |
Arst1g03880 | 1149 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 540 | 824 | IPR027417 | - | |
Arst1g03880 | 1149 | FunFam | probable ATP-dependent RNA helicase DDX17 | 435 | 677 | - | - | |
Arst1g03880 | 1149 | Pfam | DEAD/DEAH box helicase | 493 | 663 | IPR011545 | GO:0003676|GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Arst1g03880 | Arst-Chr1 | 100053452 | 100059676 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Arst1g03880 | 457 | 846 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 34.351 | 3.73e-67 | 230 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Arst1g03880 | K12823 | - | gmx:100807830 | 1298.49 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Arst1g03880 | 1 | 100053452 | 100059676 | Arst4g01245 | 4 | 12367544 | 12374473 | PCT |