Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g03880 ATGGCTGCAGCAGAGGCAGCTCAAGCTGCCGCTGGTCCACGGTATGCACCTGATGATCCCACCCTTCCTACGCCATGGAAGGGGCTAATTGATGGAAGCACTGGTCTTTTGTACTACTGGAACCCTGAAACTAATGTCACCCAGTATGAGAAACCTCCCCCTTTGCCGTCGGGCCCTGCTCCGGCTGCTTCTACACCCAACATGGCGCCCATACCCGTGGCTCATGCGATGCAATCCGGTGGGATGATGGGGCAGCATGGGCAGCAAATGCTTCAGTCCTCTCAACAGCAAGGGAGTAACCTTGCTCAGCAACATGGGCAAATGATGCCACAACAGCAGAGTTCGCATGTGGCATCTCAGCAGAAGCCATCTCCGGTTGCACAAGGGGTGCAACAGCAGAATTTGCAGTTGGCACAGTCCATGCCACAACCAGGGTTTAATCAGGCTGGACAGCATTCATTGCCACATCAGGGACAGCATTCAATGCAGCCTCAGGGACAGTATCCCATGCAACCCCAAGGGCAACAAATGGTCCAGCCTAAAGGGCAGCAGATGACACAACAACCACATCAGATGCATTATCAGATGCAGCCCCAAGGTATCAATGCCCAACATTTTGGTCAAGGAGCATCTCAGGCTCAGGGCTCACATTCTGTGCAACCACAAGCACATCAATTCGCCCCCCAGAGCATGCATTATATGCCATATCAGCCAAACATGCCTCAACCTGTGCAGCCAAGTTCCCAGCATAACATGCATGGTCATTCTTATGAAAACCAACAAGACTTCAAATCAGCATTCCCAAAGAGTAGATCCGGACCATCTGGGCAAGTGCCAGATGGAGGTGCAAATGCTGGTCACTCAAAACAGTTTGGTGGCGCACCAGGAAGCATACAACAGTCTCCCTCTGCAGTGCCATTACAACAGGGTAGTTCTTATCCAGTTTACCAACATGGTCCTAGCTTTCAAAACCAGATGGGGCCTGGTATGATGCATGGTCATCCACCCAATGTCCATCCTGGAAGCCAAAAGATGGGACATGCAGATAATTTTCATGGTAGAGCTGGGAATGAATATTACTATAACTCTAGCAAAGAGATGCCAGCTATGGGTCCTCAGCAGCCAAATATTGCACCAATACCCATTTCAACAAAGCAGCAGGATATGAGAATGGGCAGCGGCCCTTTTCAAAATGTAATGCCTAGTGGAAATGGAAGTGGTATCCCAGGTCATCCAATGCACATGTTTCCACCAGTAGGAGGGCATCCGCCTCTCTCAAGTAACTCCTTGAAAGGACCTCCTTATATGGGATCTTCAGATGTTACTGATATGACACCTGCTGAAATTTATTGTCAGCAACATGAAGTTACAGCAACGGGTGACAACATTCCACCTCCTTTTATGACATTTGATGCTACTGGATTTCCTCCAGAGATTTTGAGAGAGATATATTCTGCTGGCTTCTCAAACCCAACACCAATTCAGGCTCAAACTTGGCCAGTAGCACTGCAAGGTAGGGACATAGTGGCAATTGCAAAAACAGGCTCTGGCAAAACATTGGGCTACTTAATGCCTGCATTCATCCTTCTTAGGCAGAGAAGGAATAATCCTTTGAATGGCCCCACTGTCTTGGTTTTAGCTCCAACACGTGAACTTGCTACACAGATCCAAGATGAGGCTGTCAAATTTGGAAGATCTTCACGTTTCTCTTGCACGTGTTTGTATGGTGGAGCACCCAAAGCCCAACAGCTAAAAGAGTTAGATCGGGGAGCAGACATTGTTGTTGCCACACCTGGCCGACTCAATGACATCCTTGAAATGAAGAAAATTGACTTTGGGCAAGTTTCACTGCTTGTGCTCGATGAGGCTGACCGTATGCTTGACATGGGTTTTGAACCTCAAATCCGGAAAATTGTTAATGAGATTCCACCACGTAGGCAAACTCTCATGTATACGGCAACATGGCCAAAAGAAGTAAGAAAAATTGCCAGTGACCTGCTCGTTAATCCTGTTCAGGTTAACATTGGAAGTGTTGATGAGCTTGCCGCAAATAAAGCTATCACACAGTATGTTGAATTTGTCCCTCAAATGGAGAAGCAGAGGCGATTAGAGCAGATCCTCAGATCCCAAGAGCGGGGCTCTAAGGTTATTATATTTTGTTCCACAAAGAGGTTATGTGATCAGCTTGCCCGTAGTATTGGTCGCAATTATGGGGCTGCTGCAATTCATGGTGACAAGTCTCAAAGTGAGAGGGATTGGGTTTTAAATCAGTTCCGGAGTGGGAAGTCACCAGTTTTAGTTGCCACTGATGTTGCTGCTCGTGGGCTTGACATCAAGGATATAAGGGTGGTTATAAACTATGATTTCCCTACTGGAGTTGAGGATTATGTACACCGAATTGGAAGAACTGGACGGGCAGGTGCTACTGGAGTATCGTACACCTTTTTCTCGGAGCAGGACTGGAAACATGCATCTGATTTAATCAAAGTCTTGGAGGGTGCAAACCAGCATGTGCCTCCAGAGCTAAGACAGATGACCTTGCGCGGACCACCAAACTTTGGAAAAGAGCGGGGTGGGATGAGTCGTTTCGACTCTGGTGGTGGTGGGCGTTGGGATAATGGTGGTCGTGGTGGCATGAGGGATGGGGGCTTTGGTGGTCGTGGTGGCATGAGAGATGGTGGCTTTAGTGGTCGGGGCGGCATGAGGGATGGTAACTTTGGTGGCCGAGGTGGCATGAGGGAGAGTGGATTCAGCAATGATGGTGGCATGAGAGATGGTGGCTTTGGTGCTCATGGTGCTAGCGGTCAAGGTGGGAGAGGTGATATGTTTGGTGGTAGGGGAAATAGAGGTCGAGGATTTGGTGGCCCTCGTGGTGGTCATGCTGGGTGGGGTAGAGGGGATCGTGGTCCAAATGACCGATTCAACATGGATGGAAGAGGAAGAGGGCGAGGACGTGGGCGATTAGACAACAGAAGAGATGTTGGATACAGGAGTAGAGGCAGAAGCCGTAGCCGTAGCCCAGAGAGAGTACGAACATGGGACTATAGTAGCAGAAGTCGTAGTAGGAGTCGCAGCAGTAGGAGCTGGAGCCGGAGCCGGAGCCGAAGCCGAAGCAGAAGCCGCAGTTGGTCGCGTGGTCGCAGTCGGAGTCGCAGCTATAGCCCTAGCCCTCGTCGGAGTCGAAGCCGCAGTCGTAGTGGTCGCAGTTACAGCCGCAGCCGCAGCCGAAGTCCCCGTAGAAGTCCCAGCTATGATAGGCGTGATAGGACAGATCAACACCATTCTGATCAAAAGGATTATAGAGAACCAGAGGTCCAAGCTCCCAATCCGGGAGTGTCTCCAAGCTCCCAAGGGCAGCAGAATTCAATTTTGGGAACTGATCAAGTGGATCAGGCGCCACTGGTTGCTGGGAGCGGTGACCCAGAAGATCCCAATGCTCTGGCATAG 3447 0.4996 MAAAEAAQAAAGPRYAPDDPTLPTPWKGLIDGSTGLLYYWNPETNVTQYEKPPPLPSGPAPAASTPNMAPIPVAHAMQSGGMMGQHGQQMLQSSQQQGSNLAQQHGQMMPQQQSSHVASQQKPSPVAQGVQQQNLQLAQSMPQPGFNQAGQHSLPHQGQHSMQPQGQYPMQPQGQQMVQPKGQQMTQQPHQMHYQMQPQGINAQHFGQGASQAQGSHSVQPQAHQFAPQSMHYMPYQPNMPQPVQPSSQHNMHGHSYENQQDFKSAFPKSXRSGPSGQVPDGGANAGHSKQFGGAPGSIQQSPSAVPLQQGSSYPVYQHGPSFQNQMGPGMMHGHPPNVHPGSQKMGHADNFHGRAGNEYYYNSSKEMPAMGPQQPNIAPIPISTKQQDMRMGSGPFQNVMPSGNGSGIPGHPMHMFPPVGGHPPLSSNSLKGPPYMGSSDVTDMTPAEIYCQQHEVTATGDNIPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNPLNGPTVLVLAPTRELATQIQDEAVKFGRSSRFSCTCLYGGAPKAQQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDELAANKAITQYVEFVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARSIGRNYGAAAIHGDKSQSERDWVLNQFRSGKSPVLVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVSYTFFSEQDWKHASDLIKVLEGANQHVPPELRQMTLRGPPNFGKERGGMSRFDSGGGGRWDNGGRGGMRDGGFGGRGGMRDGGFSGRGGMRDGNFGGRGGMRESGFSNDGGMRDGGFGAHGASGQGGRGDMFGGRGNRGRGFGGPRGGHAGWGRGDRGPNDRFNMDGRGRGRGRGRLDNRRDVGYRSRGRSRSRSPERVRTWDYSSRSRSRSRSSRSWSRSRSRSRSRSRSWSRGRSRSRSYSPSPRRSRSRSRSGRSYSRSRSRSPRRSPSYDRRDRTDQHHSDQKDYREPEVQAPNPGVSPSSQGQQNSILGTDQVDQAPLVAGSGDPEDPNALA 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g03880 1149 MobiDBLite consensus disorder prediction 1041 1076 - -
Arst1g03880 1149 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Arst1g03880 1149 MobiDBLite consensus disorder prediction 967 1006 - -
Arst1g03880 1149 MobiDBLite consensus disorder prediction 243 267 - -
Arst1g03880 1149 CDD SF2_C_DEAD 688 817 - -
Arst1g03880 1149 MobiDBLite consensus disorder prediction 82 227 - -
Arst1g03880 1149 SMART helicmild6 724 808 IPR001650 -
Arst1g03880 1149 SMART ultradead3 488 691 IPR014001 -
Arst1g03880 1149 MobiDBLite consensus disorder prediction 1041 1149 - -
Arst1g03880 1149 MobiDBLite consensus disorder prediction 46 439 - -
Arst1g03880 1149 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 500 674 IPR014001 -
Arst1g03880 1149 MobiDBLite consensus disorder prediction 1079 1104 - -
Arst1g03880 1149 MobiDBLite consensus disorder prediction 844 1006 - -
Arst1g03880 1149 MobiDBLite consensus disorder prediction 378 405 - -
Arst1g03880 1149 SMART ww_5 21 54 IPR001202 GO:0005515
Arst1g03880 1149 Gene3D - 444 678 IPR027417 -
Arst1g03880 1149 MobiDBLite consensus disorder prediction 1 28 - -
Arst1g03880 1149 CDD WW 23 51 IPR001202 GO:0005515
Arst1g03880 1149 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 444 847 - -
Arst1g03880 1149 Pfam WW domain 22 52 IPR001202 GO:0005515
Arst1g03880 1149 Gene3D - 679 849 IPR027417 -
Arst1g03880 1149 FunFam ATP-dependent RNA helicase RhlB 678 850 - -
Arst1g03880 1149 MobiDBLite consensus disorder prediction 294 325 - -
Arst1g03880 1149 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 703 847 IPR001650 -
Arst1g03880 1149 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 469 497 IPR014014 GO:0003724
Arst1g03880 1149 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Arst1g03880 1149 SUPERFAMILY WW domain 14 52 IPR036020 GO:0005515
Arst1g03880 1149 MobiDBLite consensus disorder prediction 1110 1129 - -
Arst1g03880 1149 Pfam Helicase conserved C-terminal domain 700 808 IPR001650 -
Arst1g03880 1149 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 620 628 IPR000629 -
Arst1g03880 1149 MobiDBLite consensus disorder prediction 52 66 - -
Arst1g03880 1149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 540 824 IPR027417 -
Arst1g03880 1149 FunFam probable ATP-dependent RNA helicase DDX17 435 677 - -
Arst1g03880 1149 Pfam DEAD/DEAH box helicase 493 663 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g03880 Arst-Chr1 100053452 100059676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g03880 457 846 Eukaryotic Initiation Factors Gene Family AT3G19760 34.351 3.73e-67 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g03880 K12823 - gmx:100807830 1298.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g03880 1 100053452 100059676 Arst4g01245 4 12367544 12374473 PCT