Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g03854 ATGGAAGCCAGATTTGGGGGAAAGAATCAGTTTTTATATGGAGCTGTGGTTCCAGAAATGAAAGGTGTTGGGAAGAGGAGTTTGGAGTGGGATTTGAATGATTGGAGATGGGACGGTGATCTCTTCACTGCTCAACAACTCAATTCGGTTCCATCAGATTGTAGAAGCCGCCAATTTTTCCCACCAAATCCTGAGATTCATGCAAATAATAATGCTATTAATGCATCTAACAGTATCTCTTCTTCAATCAACCCTGTTGAAGAAGGGAAGAGAGAGTTGGAGAAGAAGAGAAGAGCTGTTGTAATAGGTGAAGGCGAAGAAAGGGAGGAGCTGAATGATGAAGGAGGAGGAGGAGGTGGTGGTGGTAGTTCTCTTAATTTGAATCTTGGAGCTCAGGTTTACCCAATCATGGTGGAAGGGGATGAGAAAAGTGGAAAGAAGACAAAGGTAGTAGAGACAGCTGCTACAACTTCTAACCGTGCAGTTTGTCAGGTACAAGATTGTAGGGTTGATCTTAGTGGTGCAAAGGATTACCACCGTCGACATAAAGTTTGTGATGTGCATTCTAAAGCTACTAAGGCCCTTGTGGGAAATGTTATGCAGCGGTTTTGTCAACAGTGTAGCAGGTTTCATGCGCTTGAGGAGTTTGATGAAGGGAAGCGGAGTTGTCGTAGGCGTCTGGCAGGCCACAATAGGAGGAGGAGGAAAACGCATCCTGATGCAGCTGGAGTTAATGGAGGTTCTCTGAATGGTGAAAGGGGTAGTAGCTATCTGTTGATGAGTTTGTTACGGATACTGTCCAATATGCATTCAAACGGGTCAGATAATACAAGGAACCAGGATATTCTCTCTCATCTACTGGGGAACCTGGCAAATCTGGCGGGTACACTTAATGAAAGAAGTATAGCCTCTTTGCTGGAGGGATCTCAAGGTTTGGTAAATTCTAGGACACCTGAAGCTGCGCTCAATGTGCCAAATCTTAATTCAAATGGTCCTGAAGCCTCAAGGCCTTCTGGTTCTCCCATCAAGACGGGTAATGGTGCCATCCGGCAGGATCCTCCAAGGTCTATGGTACAGTGTGAGGCAGCACCTTTGAATGCTGTCACAGAGAAATGCGTACCTTTAAGTCATGGTGCAGTGGCAAAGTTGAAACCTTCGGGAATCCAGCCCTCCTCAAATGTACTTCTATCGAGGGATAGCCAACCATCCCAGTTAATTGCAGCAGATACTAGCGTTGGAAGGGATCACTTAAATAACATCGACCTGAATAATGTATATGATGATACACAGGATTGTGCCGAGAATCCTAAGTCGTCTTCTGCTCCCGTGGGAGAGGTTAGGTCTCTTGATCATCCTTTGTGGTTGCAATGTAACTCTCTCAAATCAAGTCCACCGCAGACAAGTATAAACTCAGATTCAACCTCCACCCAGTCACCATCTAGTTCTAGTGGAGAAGCTCAGTCTCGCACAGATCGAATAGTTTTCAAACTCTTTGGCAAGGATCCAAGTGATTTTCCCCATGTTCTCCGATCACAGATCCTCAATTGGTTATCACACAGTCCTACCGAGATTGAGAGCTATATAAGGCCAGGCTGTATCGTATTAACAATATATCTCCGCCTCGAGAAATCTGCATGGGAGGAGCTCTCCTGTAACCTCGGATCCAGCTTGAGCAAGCTTGCTTCAAATGATTCTTTCTGGACAACAGGTTGGGTATATACAAGGGTGCAACAATCTGTAGCTTTTTTGTATAACGGCCAAGTTGTCTTAGACGCGCCGTTGCATCTTAGAAGCCCACAGAATTGTAGGATTTCATGCATTAAACCACTTGCTGTTCCTAAAAATGCAAATGCTAAGTTTACTGTGAAAGGGTTCAACCTTTTCAGATCCAGCACAAGGATGCTTTGTGCTTTTGAAGGGAAGTATCTGGTACATGATAGTTCTCATGATTTGATTGATGTAGCCGATGTATCCGATGCAGCTATCCAACATCTCAGCTTCTCTTGTCAAATACCAAATGTAACTGGCAGGGGGTTTGTTGAGGTGGAAGATCATGGTCTTAGCAGCTGTTCCTTTCCATTTATAGTCGCAGAGCAAGAAATTTGTACAGAGATCTGCAAGCTGGAGAATGTGATTGAGGCGGCAGATGCCACTGATGACGTCTTGTTAAAGAGCAAACAAATAGAAGAAAAGACTCGAGCTCTGGAATTCTTACAAGAAATGGGTTGGCTTCTTCATAGAAGTCGTTTGAATGTTAGGCTAGGTACCCTGGCGCCTACTCAGGATCCCTTTCATTTCAGTCGGTTCGTGTGGCTTGTTGATTTCTCCATGGACCATGATTGGTGTGCAGTGGTGAAAAAACTCTTGGACATTATATTTGAGGATGGTGTTGATGTAGGAGATCATACCTCCATCGAGCTCGCGTTATTGGACATGGGTCTTCTACACAAAGCTGTGAAGAGAAATTCAAGGCCTATGGTGGAACTATTGTTAAAATTTGTGCCTACGAAAAGTTCAGCTGGGGCAGCAAAATTCTTATTTAGACCTGATAATGTTGGGCCGGCAGGGTTAACTCCACTTCATGTCGCAGCAAGCATGAAAGGCTCTGAGAATGTCTTGGATGCATTAACTGATGATCCAGGAATGGTTGGAATTGAAGCATGGAAAAGTGCTAGGGACAATACAGGCTTGACGCCTAACGATTATGCAAGCCTCCGCGGCTATTTCTCCTACATTCAACTTGTCCAGAAGAACACCAACAAAAGGCGCGAAGGACAACATGTGCTTGATATCCCCGGCGCCATTGTAGACAGTAACACAAAGCAGAAGCAACTAGATGTGAACAGGACATCTAAGCTTGCAAGTTTGCACACCGAGAAGCTCGAAACCACAGTGATGGCGAGTCAATGCGGGATATGCCAGCACAGGCTGGCTTATGGCGGCACAAGAGCGGCACTGGTTTATCGGCCGGCGATGCTCTCACTTGTGGCCATTGCAGCTGTTTGTGTATGTGTGGCATTGCTCTTCAAAAGCTCACCTAAAGTTTATTATGTCTTCCAGCCTTTCAACTGGGAATCACTGGGATATGGTTATATCTAA 3099 0.4505 MEARFGGKNQFLYGAVVPEMKGVGKRSLEWDLNDWRWDGDLFTAQQLNSVPSDCRSRQFFPPNPEIHANNNAINASNSISSSINPVEEGKRELEKKRRAVVIGEGEEREELNDEGGGGGGGGSSLNLNLGAQVYPIMVEGDEKSGKKTKVVETAATTSNRAVCQVQDCRVDLSGAKDYHRRHKVCDVHSKATKALVGNVMQRFCQQCSRFHALEEFDEGKRSCRRRLAGHNRRRRKTHPDAAGVNGGSLNGERGSSYLLMSLLRILSNMHSNGSDNTRNQDILSHLLGNLANLAGTLNERSIASLLEGSQGLVNSRTPEAALNVPNLNSNGPEASRPSGSPIKTGNGAIRQDPPRSMVQCEAAPLNAVTEKCVPLSHGAVAKLKPSGIQPSSNVLLSRDSQPSQLIAADTSVGRDHLNNIDLNNVYDDTQDCAENPKSSSAPVGEVRSLDHPLWLQCNSLKSSPPQTSINSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKDPSDFPHVLRSQILNWLSHSPTEIESYIRPGCIVLTIYLRLEKSAWEELSCNLGSSLSKLASNDSFWTTGWVYTRVQQSVAFLYNGQVVLDAPLHLRSPQNCRISCIKPLAVPKNANAKFTVKGFNLFRSSTRMLCAFEGKYLVHDSSHDLIDVADVSDAAIQHLSFSCQIPNVTGRGFVEVEDHGLSSCSFPFIVAEQEICTEICKLENVIEAADATDDVLLKSKQIEEKTRALEFLQEMGWLLHRSRLNVRLGTLAPTQDPFHFSRFVWLVDFSMDHDWCAVVKKLLDIIFEDGVDVGDHTSIELALLDMGLLHKAVKRNSRPMVELLLKFVPTKSSAGAAKFLFRPDNVGPAGLTPLHVAASMKGSENVLDALTDDPGMVGIEAWKSARDNTGLTPNDYASLRGYFSYIQLVQKNTNKRREGQHVLDIPGAIVDSNTKQKQLDVNRTSKLASLHTEKLETTVMASQCGICQHRLAYGGTRAALVYRPAMLSLVAIAAVCVCVALLFKSSPKVYYVFQPFNWESLGYGYI 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g03854 1032 SUPERFAMILY SBT domain 161 241 IPR036893 GO:0003677|GO:0005634
Arst1g03854 1032 MobiDBLite consensus disorder prediction 322 345 - -
Arst1g03854 1032 MobiDBLite consensus disorder prediction 227 249 - -
Arst1g03854 1032 ProSiteProfiles Zinc finger SBP-type profile. 160 237 IPR004333 GO:0003677
Arst1g03854 1032 Gene3D - 782 931 IPR036770 -
Arst1g03854 1032 SUPERFAMILY Ankyrin repeat 812 916 IPR036770 -
Arst1g03854 1032 Gene3D - 154 224 IPR036893 GO:0003677|GO:0005634
Arst1g03854 1032 MobiDBLite consensus disorder prediction 461 488 - -
Arst1g03854 1032 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 112 898 IPR044817 GO:0003677
Arst1g03854 1032 Pfam SBP domain 163 236 IPR004333 GO:0003677
Arst1g03854 1032 FunFam Squamosa promoter-binding-like protein 14 154 224 - -
Arst1g03854 1032 MobiDBLite consensus disorder prediction 322 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g03854 Arst-Chr1 99846381 99852372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g03854 1 1030 SBP-box Gene Family AT3G60030 46.711 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Arst1g03854 SBP 5.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g03854 - - gmx:100776125 1413.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g03854 1 99846381 99852372 Arst1g03854 1 99846381 99852372 ECH