LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst1g03773	ATGGAGGACAGAGGAGGAACCATTCTGATGAAAAGGTATGAGGTGGGGCGTATGCTTGGGCAAGGAAACTTTGCAAAAGTTTACCATGCAAGGAACCTCAAGACCGGGCAGAGTGTTGCCATCAAAGTCCTTAACAAGGATATGGTGATGAAGTTTGGCATGGCTGAGCAAATCAAGCGTGAAATCTCGGTGATGCGGCTCGTGAGGCACCCCAACATTGTGCATCTCTACGAGGTGATGGCAAGCAAGACCAAGATATACTTTGTGATGGAATATGTCAAAGGTGGTGAGCTTTTTGACAAGGTGTCCCTAGGGAGGTTGAAAGAAGACCTGGCCAGAAAATATTTCCAGCAATTGATGGATGCCATTGATCTTTGCCACAGCAGAGGAGTGTATCACCGCGACCTCAAGCCGGAGAACCTTCTCTTGGACGAAAATGGGAACCTCAAGGTCACAGACTTCGGCTTGAGCGCCTTGACGGAGAGCAGAAAGAGTGACGGCCTTCTTCACACAACTTGTGGAACTCCGGCCTATGTGGCTCCAGAGGTGATTAGGAAGAAAGGCTACGACGGAGCCAAGGCAGATATTTGGTCTTGTGGCGTGATTCTTTATGTTCTGTTGGCTGGATATCTTCCTTTCCGGGATAAGAATCTCATTGAAATGTATAGAAAGATTGCCAAAGCAGATTTCAAGTGCCCTCAATGGTTCCCTGTTGATGCTAAAAGGCTTCTCTACAGGATTCTTGATCCTAATCCAATAACCAGAGTTACTATTCCCAGAATCATGGAGAGTAGATGGTTCCAAAAGGGGTATGAGCACAATGCATTATCCCATCTCCCACCTTTGTCCCCAAGATGGGGTGGTGATGACTGTAGCTCCGATGTTGAGGCTGCATTTGCATTTACCTACTCCTCCTCCTCCTCCTTCTCCTACTCAGGAGAAGACGATGAAGAAGTAGTAGTTCCCATGAAGCTGTATCGCTTCAATGCGTTTGATATCATAGCACTTTCCTCAGGGTTTGATCTCTCTGGCTTGTTTGAGAAAGATAACAGTCAGAAACAACATGCAATGTTTATAACAAGAATGCCACCGGCAGTGATTGCATCAAAGCTGGAGGAGATAGGACAGATGGATAATAGTTTCAAGGTGATGAGGAATAATGGAGTTGTTAGGTTGGAAAAAAGAAATACAAAGGGAACCAGCCAACTCAGCATAGATACAGAGATTTTTCAAGTTACAGATTCCTTCCATGTTGTTGAGATCAACAAGGTACTTGGGGACTCATTGGAATACACCACATTCTTGGAGCACCATCTTAAGCCTTTCCTTGATGAAATTGTTTTGGCTTGGCAAGGATGTCACAACCACCAATAA	1374	0.4534	MEDRGGTILMKRYEVGRMLGQGNFAKVYHARNLKTGQSVAIKVLNKDMVMKFGMAEQIKREISVMRLVRHPNIVHLYEVMASKTKIYFVMEYVKGGELFDKVSLGRLKEDLARKYFQQLMDAIDLCHSRGVYHRDLKPENLLLDENGNLKVTDFGLSALTESRKSDGLLHTTCGTPAYVAPEVIRKKGYDGAKADIWSCGVILYVLLAGYLPFRDKNLIEMYRKIAKADFKCPQWFPVDAKRLLYRILDPNPITRVTIPRIMESRWFQKGYEHNALSHLPPLSPRWGGDDCSSDVEAAFAFTYSSSSSFSYSGEDDEEVVVPMKLYRFNAFDIIALSSGFDLSGLFEKDNSQKQHAMFITRMPPAVIASKLEEIGQMDNSFKVMRNNGVVRLEKRNTKGTSQLSIDTEIFQVTDSFHVVEINKVLGDSLEYTTFLEHHLKPFLDEIVLAWQGCHNHQ	457

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Arst1g03773	457	CDD	CIPK_C	329	444	-	-
Arst1g03773	457	ProSitePatterns	Protein kinases ATP-binding region signature.	19	51	IPR017441	GO:0005524
Arst1g03773	457	SUPERFAMILY	Protein kinase-like (PK-like)	9	297	IPR011009	-
Arst1g03773	457	FunFam	Non-specific serine/threonine protein kinase	323	448	-	-
Arst1g03773	457	SMART	serkin_6	13	267	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Arst1g03773	457	ProSiteProfiles	Protein kinase domain profile.	13	267	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Arst1g03773	457	FunFam	Non-specific serine/threonine protein kinase	5	92	-	-
Arst1g03773	457	Gene3D	Transferase(Phosphotransferase) domain 1	6	290	-	-
Arst1g03773	457	ProSiteProfiles	NAF domain profile.	323	347	IPR018451	GO:0007165
Arst1g03773	457	CDD	STKc_SnRK3	12	266	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst1g03773	Arst-Chr1	98924330	98925925	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst1g03773	3	452	CBL-interacting serine-threonine protein kinases	AT5G45820	60.177	0.0	549

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Arst1g03773		Pkinase	2.1e-74	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst1g03773	K07198		-	gmx:100807927	605.905

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