Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g03713 ATGATGGGCGAGTCAGATAACGAGTCAGGAGGTCAAGGAGGGAACGAGTTCTCATCATCATCAGGAGGTAGTGGACTATGCAGAGAACAGGACCGCCTTCTTCCGATTGCCAACGTCGGAAGAATCATGAAGAAGGCACTTCCGGCGAACGCCAAGATCTCAAAGGAGGCCAAAGAGACGGTGCAAGAGTGCGTTTCTGAGTTCATAAGCTTCATAACAGGGGAAGCTTCTGACAAGTGCCAGAAGGAGAAGCGGAAGACCATCAACGGTGATGATCTCTTGTGGGCCATGACTACGCTCGGATTCGAGGATTATGTGGAGCCTCTCAAGATTTATCTCCATAAATACAGGGAGATGGAAGGTGACAAGACTCCCATCGTTGGTGGCGGCAGACAGCACCACCCTGATGATCACGCCGGTGATGACGCTGCCACCGCCGGAGCCCTTTATGGTGGCGTGCCTTCTACTATGATGATGATGATGGGCGGACACGTGTATGGATCTGCCAATAATGGATCAGCATCTTCTGGAAGAACTACTAGGTAG 546 0.5147 MMGESDNESGGQGGNEFSSSSGGSGLCREQDRLLPIANVGRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKIYLHKYREMEGDKTPIVGGGRQHHPDDHAGDDAATAGALYGGVPSTMMMMMGGHVYGSANNGSASSGRTTR 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g03713 181 MobiDBLite consensus disorder prediction 1 26 - -
Arst1g03713 181 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 97 IPR003958 -
Arst1g03713 181 ProSitePatterns NF-YB/HAP3 subunit signature. 64 80 IPR003956 GO:0005634|GO:0006355|GO:0043565
Arst1g03713 181 SUPERFAMILY Histone-fold 30 131 IPR009072 GO:0046982
Arst1g03713 181 Gene3D Histone, subunit A 25 145 IPR009072 GO:0046982
Arst1g03713 181 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Arst1g03713 181 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Arst1g03713 181 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Arst1g03713 181 FunFam Nuclear transcription factor Y subunit B-3 23 146 - -
Arst1g03713 181 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6 132 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g03713 Arst-Chr1 98395842 98396647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g03713 2 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.953 4.87e-69 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Arst1g03713 CBFD_NFYB_HMF 1.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g03713 K08065 - gmx:100305641 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g03713 1 98395842 98396647 Arst4g00800 4 6387890 6388674 PCT