Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst1g03675 | ATGTCTTTCATCCGTAACCACGGCGGAGTCTTCCACGGTGGCCCCACCACGGATCACCACCTTCCATCAAAACGCAAACTTGAAGACTCCGGCTCCCTCATCGATGACAGCAGCGACAGCAACGATTTGATGAGCGACTTAGTGTCGGTCAGAATGAGAAAAGACGAAGGAGGAGCAGTGAATTCATGGTCTCCAATTAAAACCCCTCTAAGCCCTCTTTCGGAGACCCAGTCCCAAAGGAGTTTATCTATTTGGCCACACTTGCAGTTCTTCGTTCGGATGATGTCTGAGGGCAACACCATGGTCATGCACGCTTTTCCGGAAGACAGCGTCAAATCCATCCACCAGCGAATTCAGCACATCAAGGGAATTCCTATCCATGAACAGAGACTGATCTATATGGGAAAGCAGCTTCAATTTGAGCAGACTCTTGCAGAGTGTTCCATTCAAAATGATGCCAGCCTCCAGTTAGTTGGTCGGATGCGCAGCACGGAGCACCCGCAAGCCTGGCAGGTCATGAACGACATGATTTCCGTTGTGTATAGAATGTGCAGAGGGGAATCTCTCCCTAATGCACTCAAGACCGTAAAGGGCCTCATTGACAGTTACCTGAACATGACCCCTAGAGACTCTGACTCTGCTTTGGGCTACTTCCAGATTTTCATGTCTTGTTCGGCACCCGCTGTTTTGGTCATGCTCTACCTTTCTCCCTTTACAGGTAATAAGGACTGTGCTGACTCTTCTGTTAGGCATTTTGTGAATTCTTGTCGTAGTACATTGTCTGAGGAATTGCATAGCCAGTTTGCGCTTGTGGTGTTGGAGTTTTGCAAATTGCTTAGGAGGCTGCACTGTGATGATCCTTTGTATATGTTTTGCCGGAGTACTTTGGGGTCCTTGTTGGAAACTGATTGTGTGTGCTGTGGTACTACTGAGGAGGATGTTAAAGGGTTGATTTTGGTTCAAGATATATTCCCATTTGTCCGTGAGCTTGCCAATAGCTTGTTGAGTGATTTGGATTTGAGTTTGGAATCCCCAACCTATGCTGGACACTTGTACAGCGATGTTAGAGATCTTAGGGCATTCTTGGTCCCTTTGAGATCTGGAATCAGTGTGCAACAATCGCTCATGGTTTCTGCAACGGATGAGGAGCGCCACACCGATGCCATGCTCACAGAAGAGATTGAAAACCTTCATTTTTTATACATTGAGTTGCTGAGCAAGATGGACGAATGCCTTAAAAAAGTGGATAGCAGCTTAGCAGACCAGGAGATAACAGAATGGGATACTCCTTATAATGCGTGGTCTCAGTATCTTTCTATTTTGAAGGAATTACATCAAATCTCTAAGCTTTATGATGGTGCTGAAGAGGAACTTTGGAATGTTTTAACACGTCAAAGAAGTGCAGTGTGTCAACTGATTGTTAGGTATGCAAAGAGGAATGATGAACATCATTGGATTCTTGAACGCAAGTGTGTGACGAATTTTGAATCAAGAAGGCATTTGGCGCTGCTGATGCTGCCAGAGGTAAAAGATGACTATGAGGAGTTGCATGAGATGCTCATTGATAGGTCTCAGTTATTGGCTGAATCTTTCGAATACATAGGACGTGTGGAACCAGAATCTCTACGGGGGGGCCTATTTATGGAATTCAAAAATGAGGAAGCTACTGGGCCGGGCGTACTGAGGGAGTGGTTTTTTCTGGTATGTCAAGAAATATTCAATCCGCAAAATGCTCTTTTTGTCGCATGCCCAAATGACAAACGAAGATTTTTCCCCAATCCTGCATCTAAAGTAGATCCTCTGCACCTTGAATATTTCCGCTTCTCTGGTCGAGTTATTGCATTGGCTTTGATGCATAGGGTGCATGTTGGTGTAGTTCTTGACCGTGTGTTTTTCCAGCAATTAGCCGGAAATGAAATTACTTTAGAAGATATAAGGGATGCAGATCCACACTTGTATAGTAGCTACAAGCAAATATTGGAGATGGATCCTGGTTTCATTGATTCAGATTCATTAGGACTGACATTTGTTAGAGAGGTGGAACAGTTAGGACACAGGGAAGTGGTTGAGCTGTGTCCCGGTGGGAAGAACATCGTTGTACATAGTAAGAACAGGGAAAATTATGTTGATCTTCTTATACAGGATCATTTTGTAACATCTATATCTGAGCAGGTGTCACAATTTGCCAAAGGCTTTGGTGATATTCTCTCAAACTCAAGCCTCGAGTCATCATTCTTTCAAAGTTTAGACCTTAAAGATCTTGACTGGATGCTGCATGGGAGTGAAGATATCATTTCTGTTGAGGACTGGAAAGCACATACTGAGTATCAAGGCTATGAAGAGACAGATCCTCAGATATCTTGGTTTTGGGAGATTCTTGGGAGGATGACAGGTGAAAAGAGAAGGGTACTTCTGTTCTTCTGGACGTCTGTGAAATATTTACCAGTTGAAGGCTTCCCTGGTTTGGCTTCGAGTCTCTCCATTTACAGGTCCCCTGAACATGAGGATCACCTTCCGACATCTCACACATGTTTTTACCGGCTGTGCCTACCAGCCTATTCATCGAGGGCCATCATGCAAGATCGTCTAAAAGTTCTCACTCAAGACCACATTGGCTGCAGTTTTGGTACTTGGTGA | 2637 | 0.4456 | MSFIRNHGGVFHGGPTTDHHLPSKRKLEDSGSLIDDSSDSNDLMSDLVSVRMRKDEGGAVNSWSPIKTPLSPLSETQSQRSLSIWPHLQFFVRMMSEGNTMVMHAFPEDSVKSIHQRIQHIKGIPIHEQRLIYMGKQLQFEQTLAECSIQNDASLQLVGRMRSTEHPQAWQVMNDMISVVYRMCRGESLPNALKTVKGLIDSYLNMTPRDSDSALGYFQIFMSCSAPAVLVMLYLSPFTGNKDCADSSVRHFVNSCRSTLSEELHSQFALVVLEFCKLLRRLHCDDPLYMFCRSTLGSLLETDCVCCGTTEEDVKGLILVQDIFPFVRELANSLLSDLDLSLESPTYAGHLYSDVRDLRAFLVPLRSGISVQQSLMVSATDEERHTDAMLTEEIENLHFLYIELLSKMDECLKKVDSSLADQEITEWDTPYNAWSQYLSILKELHQISKLYDGAEEELWNVLTRQRSAVCQLIVRYAKRNDEHHWILERKCVTNFESRRHLALLMLPEVKDDYEELHEMLIDRSQLLAESFEYIGRVEPESLRGGLFMEFKNEEATGPGVLREWFFLVCQEIFNPQNALFVACPNDKRRFFPNPASKVDPLHLEYFRFSGRVIALALMHRVHVGVVLDRVFFQQLAGNEITLEDIRDADPHLYSSYKQILEMDPGFIDSDSLGLTFVREVEQLGHREVVELCPGGKNIVVHSKNRENYVDLLIQDHFVTSISEQVSQFAKGFGDILSNSSLESSFFQSLDLKDLDWMLHGSEDIISVEDWKAHTEYQGYEETDPQISWFWEILGRMTGEKRRVLLFFWTSVKYLPVEGFPGLASSLSIYRSPEHEDHLPTSHTCFYRLCLPAYSSRAIMQDRLKVLTQDHIGCSFGTW | 878 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst1g03675 | 878 | Gene3D | Hect, E3 ligase catalytic domains | 520 | 748 | - | - | |
| Arst1g03675 | 878 | SMART | hect_3 | 536 | 876 | IPR000569 | GO:0004842 | |
| Arst1g03675 | 878 | FunFam | E3 ubiquitin-protein ligase UPL5 isoform A | 79 | 176 | - | - | |
| Arst1g03675 | 878 | Pfam | HECT-domain (ubiquitin-transferase) | 567 | 865 | IPR000569 | GO:0004842 | |
| Arst1g03675 | 878 | ProSiteProfiles | HECT domain profile. | 538 | 878 | IPR000569 | GO:0004842 | |
| Arst1g03675 | 878 | SUPERFAMILY | Ubiquitin-like | 76 | 163 | IPR029071 | - | |
| Arst1g03675 | 878 | PRINTS | Ubiquitin signature | 120 | 140 | IPR019956 | - | |
| Arst1g03675 | 878 | PRINTS | Ubiquitin signature | 141 | 162 | IPR019956 | - | |
| Arst1g03675 | 878 | PRINTS | Ubiquitin signature | 99 | 119 | IPR019956 | - | |
| Arst1g03675 | 878 | PANTHER | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE | 89 | 876 | - | - |
Showing 1 to 10 of 21 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst1g03675 | - | - | gmx:100789233 | 1248.03 |
Showing 1 to 1 of 1 entries