Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g03642 ATGGAGGAGGGTAATGGCACTTATAGTATGATGGCTTTTGGCGAGAACATCATGAGTAGTAGTAGTAGTAATAATAGTGGGATTTATCCAATCATCATGATGCCTTTACTCACTACCACTCACAATCAAGTTATTAATCCTCTTCCTAATCTTAATTACTCTAATCCTAATAATGCAGACACAAATAGTTCCTTCCCTCTTCCCATGCTTACTACTCATCAAGAACCAATCCGCAACAACATGCTCCACACCAACAACACTGGGATATGTTACTTTATGGACATACACAACAACCACCATGGAAGCTCTTCTTCTTCTTCCTCTTCATCAGCTCTCAAGGCCAAGATCATGTCTCATCCTCACTATCATCGCCTCTTGGCTGCATACGTCAATTGTCAAAAGGTTGGAGCACCGCCTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGAATCTGCAGCGGCAATGGCAGCAACTTCTTGCATAGGTGAAGATCCAGCGCTGGATCAGTTCATGGAGGCCTACTGTGAGATGCTTATCAAGTACGAGCAAGAACTCTCCAAACCCTTCAAGGAATCCATGCTTTTCCTTCAGCGCATGGAGTCCCAGTTCAAATCCCTCTCCATTTCTCCTTCCAATAACTTCGCCGGTAATGAAGGTGTTGATAGGAATGGATCATCTGAGGACGATGTTGATTTACAAAACAATGCAATAATTGATCCGCAAGCAGAGGAGCGGGAGCTGAAGGGTCAGCTGTTGCGCAAGTACAGCGGATACCTTGGTAGTCTGAAGCAGGAATTCATGAAGAAGAGGAAAAAAGGGAAGCTCCCTAAAGAAGCAAGGCAACAGCTACTTGAATGGTGGAGCAGACATCACAAATGGCCTTACCCATCTGAATCACAGAAGGTGGCGCTTGCAGAGTCAACAGGTTTGGATCAGAAACAGATAAACAACTGGTTTATTAATCAAAGGAAACGGCATTGGAAGCCTTCAGAGGATATGCAGTTTGTGGTGATGGATCAAAGCCATCCACATTATTACATTGACAATGTTGTGGCCAATCCCTTTCCCATGGATTTTTCCCACACAATGCTTTGA 1095 0.4411 MEEGNGTYSMMAFGENIMSSSSSNNSGIYPIIMMPLLTTTHNQVINPLPNLNYSNPNNADTNSSFPLPMLTTHQEPIRNNMLHTNNTGICYFMDIHNNHHGSSSSSSSSSALKAKIMSHPHYHRLLAAYVNCQKVGAPPEVVARLEEACESAAAMAATSCIGEDPALDQFMEAYCEMLIKYEQELSKPFKESMLFLQRMESQFKSLSISPSNNFAGNEGVDRNGSSEDDVDLQNNAIIDPQAEERELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHHKWPYPSESQKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDQSHPHYYIDNVVANPFPMDFSHTML 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g03642 364 ProSiteProfiles 'Homeobox' domain profile. 266 329 IPR001356 GO:0003677
Arst1g03642 364 SUPERFAMILY Homeodomain-like 268 343 IPR009057 -
Arst1g03642 364 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 75 335 - -
Arst1g03642 364 SMART KNOX2_2 157 208 IPR005541 GO:0003677|GO:0005634
Arst1g03642 364 Pfam Homeobox KN domain 286 325 IPR008422 GO:0003677|GO:0006355
Arst1g03642 364 Gene3D - 271 333 - -
Arst1g03642 364 Pfam KNOX2 domain 160 206 IPR005541 GO:0003677|GO:0005634
Arst1g03642 364 ProSiteProfiles ELK domain profile. 246 266 IPR005539 GO:0003677
Arst1g03642 364 SMART KNOX1_2 110 154 IPR005540 GO:0003677|GO:0005634
Arst1g03642 364 FunFam Homeobox protein knotted-1-like 2 271 333 - -
Arst1g03642 364 SMART HOX_1 268 333 IPR001356 GO:0003677
Arst1g03642 364 SMART ELK_2 246 267 IPR005539 GO:0003677
Arst1g03642 364 Pfam KNOX1 domain 111 150 IPR005540 GO:0003677|GO:0005634
Arst1g03642 364 Pfam ELK domain 246 267 IPR005539 GO:0003677
Arst1g03642 364 ProSitePatterns 'Homeobox' domain signature. 304 327 IPR017970 GO:0000981|GO:0006355
Arst1g03642 364 CDD homeodomain 278 330 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g03642 Arst-Chr1 97695656 97699772 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g03642 92 364 Homeobox Transcription Factor Family AT1G62360 76.042 8.35e-134 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Arst1g03642 KNOX2 2.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g03642 - - gmx:547796 486.878