Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g03588 ATGATGCAGCCCGGACCTGGCATGGCTCCTCCACCCAACATGGCCCAGCAGCCCAACCAGCAGTACCAGCAGCAGCAGCCATACATGATGATGCCTCCGCAGGCCCAGCCACCACAGATGTGGGCCCCCTCCCCTCAGGCTCCGACACAGTCCGTGCCTCCTTCCCAGCCCGTTCAGCCCGCCAGTGCCGATGAGGTCCGAACCCTGTGGATCGGTGATTTGCAGTACTGGATGGATGAGAACTACCTCTACACCTGTTTTGCTCACACTGGCGAGATGGCATCTGTTAAAGTAATTAGGAATAAGCAAACTAGTCAATCCGAGGGTTATGGGTTTATTGAGTTTACAAGCCGTGCTGCTGCTGAGAGAATACTACAAACATTCAATGGTACCATTATGCCAAATGGCGGGCAGAATTTCAGGTTGAACTGGGCAACCTTTAGCGCTGGTGAGAGGCGTCATGACGACAGTCCAGATTACACTATATTTGTTGGAGATTTGGCTGCAGATGTTACGGACTACCACCTTCAGGAGACATTTAGGGGTAGATACTCCTCGGTTAAGGGGGCTAAAGTTGTAATTGACAGGCTTACTGGGCGGACAAAGGGCTACGGTTTTGTTAGGTTTGCAGATGAGAGTGAGCAAGTTAGAGCTATGACAGAAATGCAGGGCGTTCTTTGTTCAACAAGACCCATGAGGATTGGACCAGCATCTAATAAAAACCCAACCACACAATCCAACAAAGCTTCATACCAGAATCCTCAAGGGGCACAGAACGAGAATGATCCAAATAATACAACTATTTTTGTTGGCAATTTGGATGCAAATGTTACAGATGATCACCTGCGACAAGTCTTTGGGCATTATGGAGAGTTAGTTCATGTGAAGATTCCATCCGGCAAGAGATGTGGATTTGTGCAATTTGCCGACAGGAGTTGTGCTGAAGAGGCACTGAGAGTTTTGAATGGAACACTTTTAGGTGGCCAAAATGTTAGGCTTTCATGGGGACGGAGTCCTTCAAACAAACAGACTCAGGCAGACCCAAACCAGTGGAATGGTAGTGGATATTATGGATATGCACAGGGCTATGAAAATTATGGTTATGCTCCCGCCGGGCAGGACCCCAACATGTATGGAAGCTATCCGGGGTATGCAAATTACCAACCTCCTCAGCAGCAGCAGCAACAAATGGGATATAGTTAA 1203 0.4855 MMQPGPGMAPPPNMAQQPNQQYQQQQPYMMMPPQAQPPQMWAPSPQAPTQSVPPSQPVQPASADEVRTLWIGDLQYWMDENYLYTCFAHTGEMASVKVIRNKQTSQSEGYGFIEFTSRAAAERILQTFNGTIMPNGGQNFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYHLQETFRGRYSSVKGAKVVIDRLTGRTKGYGFVRFADESEQVRAMTEMQGVLCSTRPMRIGPASNKNPTTQSNKASYQNPQGAQNENDPNNTTIFVGNLDANVTDDHLRQVFGHYGELVHVKIPSGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQADPNQWNGSGYYGYAQGYENYGYAPAGQDPNMYGSYPGYANYQPPQQQQQQMGYS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g03588 400 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 59 342 - -
Arst1g03588 400 CDD RRM1_SECp43_like 68 148 - -
Arst1g03588 400 SUPERFAMILY RNA-binding domain, RBD 28 148 IPR035979 GO:0003676
Arst1g03588 400 CDD RRM2_SECp43_like 159 238 - -
Arst1g03588 400 Gene3D - 246 347 IPR012677 -
Arst1g03588 400 MobiDBLite consensus disorder prediction 379 400 - -
Arst1g03588 400 MobiDBLite consensus disorder prediction 385 400 - -
Arst1g03588 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 147 IPR000504 GO:0003723
Arst1g03588 400 SUPERFAMILY RNA-binding domain, RBD 152 252 IPR035979 GO:0003676
Arst1g03588 400 SMART rrm1_1 68 143 IPR000504 GO:0003723
Arst1g03588 400 SMART rrm1_1 267 334 IPR000504 GO:0003723
Arst1g03588 400 SMART rrm1_1 161 235 IPR000504 GO:0003723
Arst1g03588 400 MobiDBLite consensus disorder prediction 31 55 - -
Arst1g03588 400 MobiDBLite consensus disorder prediction 14 30 - -
Arst1g03588 400 Gene3D - 10 151 IPR012677 -
Arst1g03588 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 239 IPR000504 GO:0003723
Arst1g03588 400 FunFam Polyadenylate-binding protein RBP45C 152 243 - -
Arst1g03588 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 338 IPR000504 GO:0003723
Arst1g03588 400 MobiDBLite consensus disorder prediction 230 267 - -
Arst1g03588 400 FunFam Polyadenylate-binding protein RBP45C 244 370 - -
Arst1g03588 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 331 IPR000504 GO:0003723
Arst1g03588 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 225 IPR000504 GO:0003723
Arst1g03588 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 134 IPR000504 GO:0003723
Arst1g03588 400 Gene3D - 152 245 IPR012677 -
Arst1g03588 400 MobiDBLite consensus disorder prediction 1 60 - -
Arst1g03588 400 FunFam Polyadenylate-binding protein RBP45 11 151 - -
Arst1g03588 400 SUPERFAMILY RNA-binding domain, RBD 251 362 IPR035979 GO:0003676
Arst1g03588 400 MobiDBLite consensus disorder prediction 234 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g03588 Arst-Chr1 97244232 97248181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g03588 68 345 Eukaryotic Initiation Factors Gene Family AT4G34110 27.817 3.85e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g03588 - - gmx:100814743 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g03588 1 97244232 97248181 Arst4g00613 4 4316544 4320431 PCT