Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g03572 ATGTCCATGGAGACTCACAGTTTCTCCCTTGGGGTCAGGGTCGCGCCATTTGTAAAGCGAACTGTAACGGTTTATCATGTGCCTCGCTTACGTAACCTTAATCGAACCCACCCTGCAGCTCAGTGCATTCTTCCACAACCACCACTTACTAACCATTCTCCCACTTTGCGAGATATATGCCAGCCTCATGTCCCCACCCATATTTTGCAAAGGATGGAAGAGATTGGATATGTGATGCCTACAGATGTTCAGAGGGAGGCTTTGCCTCATCTTTTCTCTGGCCGTGACTGTATACTTCATGCTCAGACAGGTTCTGGGAAGACACTTACATACCTGCTTTTGATTTATTCCATCATCAACACTTTGAAATCTTCTGTGCAAGCGCTTGTTGTCGTCCCCACTCGTGAACTTGGCATGCAAGTCACTAAAGTTGCAAGGATGTTGGCAGCAAAGCCAACTGGAGTCGACGGGGAGCAGAAGTCGTGTACCATCATGGCTCTCTTGGATGGAGGAACATTGAGAAGACACAAGAGTTGGTTAAAGGCAGAGCCTCCAACAGTAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACAAATTTTCTTGCTTGAATCTGTGCGGGTGCTAATTGTTGATGAGACAGTTTTTGCAAGTGCATCTATACCACAGCACAGACGATTTCTTCACGATTGTGTGCAGCAAAAATGGACAAAGAGTGATGTGATCCATATCCATGTCAGTCCAGTGGAGCCCATGCCATCTCGCCTGTGTCATAGATTTATAATATGCAATAACAAAAGGAAACTACAAACCCTATTATCCTTGATTCAATCTGATGCACCTGAGTCTGGCATTATATTTGTTGGTGAACAGTCTGAGAAGTCCAAAAAGGCTGGAAACGCTCCATCAACAGACCTTGTCATTGACTTTTTGAAGACATCATATGAAGGGCCTTTAGATATTGTCCTTCTCGAGGATGACATGAATTTCAACTCACGCGCAGTTTCATTGTTGGAGGTTCGAAAAGGAGGTGGATATCTGCTTGTAGCAACAGATATAGCTGCTAGAGGAGTTGACCTTCCTGAAATGTCTCATATCTACAACTTTGACTTGCCAAGGACTGCCATTGATTATCTTCATCGAGCAGGCAGGACTTGTAGGAAACCTTTTTCTGACATGAAATGTACTGTTACCACCATTACAGTTCCCGAGGAGAGGTTTGTTCTGCAGAAATATGAAAATGAGTTGATGTTTAACTCTGAGGAGCTTATTCCATAA 1287 0.4406 MSMETHSFSLGVRVAPFVKRTVTVYHVPRLRNLNRTHPAAQCILPQPPLTNHSPTLRDICQPHVPTHILQRMEEIGYVMPTDVQREALPHLFSGRDCILHAQTGSGKTLTYLLLIYSIINTLKSSVQALVVVPTRELGMQVTKVARMLAAKPTGVDGEQKSCTIMALLDGGTLRRHKSWLKAEPPTVVVATVGSLCQMLERQIFLLESVRVLIVDETVFASASIPQHRRFLHDCVQQKWTKSDVIHIHVSPVEPMPSRLCHRFIICNNKRKLQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTDLVIDFLKTSYEGPLDIVLLEDDMNFNSRAVSLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSDMKCTVTTITVPEERFVLQKYENELMFNSEELIP 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g03572 428 Pfam Helicase conserved C-terminal domain 271 390 IPR001650 -
Arst1g03572 428 CDD DEADc 68 235 - -
Arst1g03572 428 Gene3D - 52 242 IPR027417 -
Arst1g03572 428 SMART ultradead3 76 281 IPR014001 -
Arst1g03572 428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 394 IPR027417 -
Arst1g03572 428 Gene3D - 256 427 IPR027417 -
Arst1g03572 428 CDD SF2_C_DEAD 261 390 - -
Arst1g03572 428 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 271 428 IPR001650 -
Arst1g03572 428 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 64 216 - -
Arst1g03572 428 Pfam DEAD/DEAH box helicase 81 217 IPR011545 GO:0003676|GO:0005524
Arst1g03572 428 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 88 242 IPR014001 -
Arst1g03572 428 SMART helicmild6 308 392 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g03572 Arst-Chr1 97081585 97084515 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g03572 67 411 Eukaryotic Initiation Factors Gene Family AT3G13920 25.798 5.28e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g03572 - - ahf:112763379 835.869