Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g03554 ATGGGAATCTCTTGGAGCAACACCAACAGTAACAGTAACAGAAGAAGAAGAAACAATTACCCACCTCCTTTTCCTCCTCCGTACTACTACTCTTCTGATGCTCATCCTCCGCAGCTTCCACCGCCGCCGCCGCCTTCTCAGCCCCCACCGCCGCAAGGCTATTACTTTCCCCCAACCAACCCTTCCACCACTCCCTACGTCGGTACCCATCCTCTGCCTCCTGCTCCTCCTCCTCAGACCCATTCCTTCTATTATTCAAATGGCTACGCCACCCCTACCGCCGCCGCCGCCACCACCAACGCTCCTAACTATGCCAATCGCCTTCACTACCACCCTTACTATGCAAATCAGGGTGCTCCCGCCTGGGCCCCTGTTCGCCCCCCCGTTGCTGCTGCCGCCGCCGCAGCTCCACCGCCCTATGTCGACCATCAAACCACTAAGAAGATTAGGAACGACGTGAACTTGCATAAAGATACTTTGCGCCTGGAGATTGACGAGCTCAACCCTGATCACCACTTGGTTTCTTTCGTTTTTGATGCCCTCTTTGATGGCAGATTTACTATCTACTACTTAGCCAAAGAAGAAGAAAAGTGTAGGTTTATTCCACTATATCCCGATGCATTTGCGCCGATCTCATTCCCCTTTCAAAAAGGAGTTGGCCAGAAATTTTGTCAGCCTCCTGGAACGGGCATTGACCTTGGTTTCTTTGAGTTAGAGGATCTTGCGAAGCCCTCACCTGAAGAAGATCTGTTTCCCCTTGTAATATGTGCTGAAACAAGTATGAGAACTTCAGAAGATGAAACTTCTGATGGTTCCACAATTGATGCATCTCCTCACATGCAAATAACTCAAGCTGTCTTAGTGAAAAGCAACGGTATTGGTCCTTTCGAGGTAAAAGTAATTAGGCAGATTCTCTGGATTGATGGAGTTCGTTATGAGTTGAGAGAGTTATATGGAATAGGAAGTGGCTCAACAGCTGCAGATTTTGATGATAATGATCCTGGGAAGGAGTGTGTAATATGCATGACCGAACCAAAGGACACTGCTGTCTTACCTTGCCGACATATGTGTATGTGCAGCGAGTGTGCAAAAGCATTACGGCTTCAATCCAATAAGTGCCCAATATGCCGCCAACCTATTGAGGAGCTCATGGAAATCAAGATAAACAATGATGACAAATGA 1182 0.4822 MGISWSNTNSNSNRRRRNNYPPPFPPPYYYSSDAHPPQLPPPPPPSQPPPPQGYYFPPTNPSTTPYVGTHPLPPAPPPQTHSFYYSNGYATPTAAAATTNAPNYANRLHYHPYYANQGAPAWAPVRPPVAAAAAAAPPPYVDHQTTKKIRNDVNLHKDTLRLEIDELNPDHHLVSFVFDALFDGRFTIYYLAKEEEKCRFIPLYPDAFAPISFPFQKGVGQKFCQPPGTGIDLGFFELEDLAKPSPEEDLFPLVICAETSMRTSEDETSDGSTIDASPHMQITQAVLVKSNGIGPFEVKVIRQILWIDGVRYELRELYGIGSGSTAADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQPIEELMEIKINNDDK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g03554 393 CDD mRING-HC-C3HC5_MGRN1-like 336 377 IPR045195 -
Arst1g03554 393 SUPERFAMILY RING/U-box 337 383 - -
Arst1g03554 393 MobiDBLite consensus disorder prediction 1 84 - -
Arst1g03554 393 SMART ring_2 338 376 IPR001841 -
Arst1g03554 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 387 IPR013083 -
Arst1g03554 393 PANTHER MAHOGUNIN 1 387 IPR045194 GO:0061630
Arst1g03554 393 FunFam probable E3 ubiquitin-protein ligase LOG2 322 387 - -
Arst1g03554 393 Pfam Zinc finger, C3HC4 type (RING finger) 336 382 - -
Arst1g03554 393 MobiDBLite consensus disorder prediction 1 18 - -
Arst1g03554 393 ProSiteProfiles Zinc finger RING-type profile. 338 377 IPR001841 -
Arst1g03554 393 MobiDBLite consensus disorder prediction 19 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g03554 Arst-Chr1 96839291 96842354 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g03554 100 393 C3H Transcription Factor Family AT3G06140 57.285 8.44e-116 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g03554 - - adu:107465273 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g03554 1 96839291 96842354 Arst1g03554 1 96839291 96842354 ECH