Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g03475 ATGCCGGCGGAGCGTAGCAGAAGGCTGAAGATGAATCGCCTCTTCACTCAGCTTCAGGCCACCATCCCACGCCCCCTTTCCAAGGCTACAAAGGAAGTCGTTATAACGGAAACGATTAGGTACATAAAGGAGCTTGAGAGGAAGAAGAACAACTTGGAGCAGATCAAGGAACTACTAATTCAAAACCATGCCAGTGGTACCACCTTCATGCTTCCATGCATGGCCGATGCTGATAATTGCTCTGTCACTGTCACTGTCTCCGCCAACGTCGCGTTTTTCGGCATTCAGACCGTGGCTCGCCGAGGTTTGATTACCATGATTTTGGAGGTGTTCAGCAACCACAAGGCTGAGATTTTGGCTGCAAATGTGGCGGTTAATGAAGGGATTTTGACATTTGCAGTCACTGCTCTATTGCAAATTGTTGCTGATGGGGAAGGAGAAGGAGAAGGGGCTGTTGAGATGATTAAGAGAGAGATCATGACTTTGTAG 489 0.4826 MPAERSRRLKMNRLFTQLQATIPRPLSKATKEVVITETIRYIKELERKKNNLEQIKELLIQNHASGTTFMLPCMADADNCSVTVTVSANVAFFGIQTVARRGLITMILEVFSNHKAEILAANVAVNEGILTFAVTALLQIVADGEGEGEGAVEMIKREIMTL 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g03475 162 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 69 IPR036638 GO:0046983
Arst1g03475 162 SMART finulus 1 51 IPR011598 GO:0046983
Arst1g03475 162 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 4 136 IPR044278 GO:0003700|GO:0006355|GO:0009960
Arst1g03475 162 Pfam Helix-loop-helix DNA-binding domain 3 46 IPR011598 GO:0046983
Arst1g03475 162 Coils Coil 35 62 - -
Arst1g03475 162 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 45 IPR011598 GO:0046983
Arst1g03475 162 Gene3D - 2 66 IPR036638 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g03475 3 136 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 27.206 4.61e-06 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst1g03475 HLH 2.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g03475 - - ahf:112704712 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g03475 1 95752871 95753724 Arst1g03475 1 95752871 95753724 ECH