Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g03472 ATGGAAGGCTCTGCCAACAATGAACGTCTTGATTTTGGGAAGATGGGCTATGGGTGCAAGCATTATAGGAGGAGATGCAAGATTCGTGCACCTTGCTGCAATGAGATCTACCCCTGCCGCCATTGCCATAACGAGGCTGCGAGCTTGTTGAGGAACCCCTATGATCGCCACGAACTCGTTCGCCAAGATGTTAAACAAGTTGTTTGTGCAGTTTGTGACACTGAGCAGCCGGTTGCTCAAGTTTGCACAAACTGTGGAGTTAGAATGGGAGAGTATTTCTGTGACATCTGCAAATTCTTCGATGATGATATAGGGAAACAACAGTTTCATTGTGATGATTGCGGAATCTGTAGGGTTGGTGGTCAAGAGAATTTTTTCCACTGCGAGAAGTGTGGGTCATGCTATTCAGTTACACTGCGTGACAATCATTTGTGTGTGGAGAACTCCATGAGGCACCACTGCCCCATTTGTTACGAGTTCCTTTTTGATTCAATGAAAGACATCAGTGTCATGAAATGTGGTCACACCATGCACCATGAATGCTTTGAAGAGATGCTAAATCGCGACACGTACTGCTGTCCCATATGCTCCAAGTCAGTGATGGACATGACCAGGACATGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTCATGCCCGAAGATTATCGGCATAGGAAGGTTTGGATATTATGCAATGACTGCAATGACACAACAGAAGTGTTCTTCCACATTCTGGGGCAAAAATGTGGTCACTGCCAATCGTATAATACGCGTGCAATCGCTCCTCCGGTTCTTCCTCAATGA 807 0.456 MEGSANNERLDFGKMGYGCKHYRRRCKIRAPCCNEIYPCRHCHNEAASLLRNPYDRHELVRQDVKQVVCAVCDTEQPVAQVCTNCGVRMGEYFCDICKFFDDDIGKQQFHCDDCGICRVGGQENFFHCEKCGSCYSVTLRDNHLCVENSMRHHCPICYEFLFDSMKDISVMKCGHTMHHECFEEMLNRDTYCCPICSKSVMDMTRTWKRIDEEIEATVMPEDYRHRKVWILCNDCNDTTEVFFHILGQKCGHCQSYNTRAIAPPVLPQ 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g03472 268 Pfam Ring finger domain 153 196 IPR001841 -
Arst1g03472 268 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 9 264 - -
Arst1g03472 268 SUPERFAMILY Zinc hairpin stack 90 147 IPR037275 -
Arst1g03472 268 SUPERFAMILY CHY zinc finger-like 16 88 IPR037274 GO:0008270
Arst1g03472 268 SMART ring_2 154 196 IPR001841 -
Arst1g03472 268 SUPERFAMILY RING/U-box 153 202 - -
Arst1g03472 268 ProSiteProfiles Zinc finger CTCHY-type profile. 89 153 IPR017921 -
Arst1g03472 268 ProSiteProfiles Zinc finger RING-type profile. 154 197 IPR001841 -
Arst1g03472 268 ProSiteProfiles Zinc finger CHY-type profile. 12 87 IPR008913 GO:0008270
Arst1g03472 268 FunFam RING finger and CHY zinc finger domain-containing protein 1 225 267 - -
Arst1g03472 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 227 IPR013083 -
Arst1g03472 268 Pfam Zinc-ribbon 201 259 IPR039512 -
Arst1g03472 268 Gene3D - 228 263 - -
Arst1g03472 268 Pfam CHY zinc finger 19 99 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g03472 Arst-Chr1 95745668 95748585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g03472 11 267 C2H2 Transcription Factor Family AT3G18290 40.840 2.40e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g03472 K10144 - gmx:100792038 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g03472 1 95745668 95748585 Arst1g03472 1 95745668 95748585 ECH
Arst1g03472 1 95745668 95748585 Arst1g03472 1 95745668 95748585 PCT