Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g03470 ATGGGGAGGCCCTCCAAATCTCAGCCTTCTTCCGACGATGAAGCGCCGTCGAATGCCTCTGACTCCGATTCCGATTCCGGTTCGGAGGAGCAACTTCCCAACGATCAGATCAACGAACAAGAAGACGACGAGGAGCTCGAAGAGGTGGCTCGCTCCGCTAGCTCTGGCGATGACGATACTGCGCCGGATGAACCTGCAGGAGACGCCGACGACGATGAACAGGACGAAAATAATGCTGACACTGAAGTTAGCAAGCGCGAGAAGGCGAGGTTGAAAGAAATGCAGAAATTGAAGAAGCAGAAGATTCAGGAGATTTTGGATGAACAAAATGCAGCTATTGATGCTGATATGAATAATAAAGGAAAGGGCCGATTGAAGTATCTGTTGCAGCAAACTGAGATTTTTGCTCATTTTGCCAAAGGTGCTCAATCTTCTTCTCAGAAGAAGTCAAAGGGAAGGGGACGCCATGCATCGAAAGTGACTGAAGAAGAGGAAGATGAAGAGTATCTTAAAGAAGAAGAAGATGGTTTGGCAAGCACGCGGCTGGTAACACAGCCATCATGTATCCAAGGGAAGATGAGGGATTATCAACTTGCTGGGTTAAACTGGCTCATACGATTGTATGAGAATGGTATAAATGGAATTCTGGCAGATGAAATGGGACTTGGGAAAACATTACAAACTATATCTTTGCTAGGGTATTTATATGAGTTCAGAGGTATAAAGGGTCCTCATATGGTTGTTGCCCCAAAGTCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTTTTACGAGCAATAAAGTTCCTTGGCAACCCGGATGAAAGGAGGCATATACGAGAGGAGTTATTGGTTGCCGGGAAGTTTGATGTATGTGTTACAAGTTTTGAAATGGTTATCAAGGAGAAGTCTGCATTGCGTCGATTTAGTTGGCGCTACATAATTATTGATGAGGCCCACAGAATCAAGAATGAGAACTCCCTCCTTTCCAAGACGATGAGGCTCTATAATACAAACTACCGACTCCTTATAACTGGCACACCACTCCAAAACAATCTTCATGAACTCTGGGCTCTTCTCAATTTTCTTCTGCCTGAAATTTTTAGCTCTGCTGAAACTTTTGATGAATGGTTCCAAATATCAGGTGAAAATAAAGTCCTTCGCCCATTTCTCCTTCGGAGGTTGAAGTCAGATGTCGAGAAAGGGTTGCCACCGAAAAAGGAAACTATACTCAAAGTAGGCATGTCACAAATGCAGAAGCAGTACTATAGGGCATTACTACAGAAAGATCTAGAGGTTGTCAATGCTGGTGGAGAACGAAAGCGACTCCTCAACATAGCAATGCAATTGCGTAAATGTTGTAATCACCCGTATCTCTTCCAAGGTGCTGAACCCGGTCCTCCCTATACTACAGGAGACCATCTCGTCACAAATGCTGGTAAAATGGTTCTATTGGATAAGTTACTTCCTAAATTAAAAGAGCGTGATTCCCGGGTCCTGATATTTTCACAGATGACTAGGCTGCTGGACATACTTGAAGATTATTTGATGTTTCGGGGATATCAATATTGTCGTATAGATGGAAACACCGGTGGAGAAGATCGTGATGCTTCCATTGAAGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCTACTCGGGCTGGAGGTCTCGGCATCAATCTTGCTACTGCTGATGTTGTAATTCTTTATGATAGTGACTGGAACCCACAAGTTGACCTGCAAGCTCAGGATCGTGCTCATAGGATTGGACAGAAGAAAGAAGTACAAGTTTTCCGATTTTGCACGGAGTATACAATTGAAGAGAAAGTAATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTAGTGATTCAGCAAGGCCGATTAGCTGAGCAGAAGACTGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACAATTACAGATGAGGATATTGACAGAATTATTGCCAAAGGAGAGGAAGCTACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACTGAAGACGCCATCAAATTTAAGATGGATGACAATGCTGAGCTTTATGATTTTGATGATGACAAGGATGAGAACAAATTTGATTTCAAAAAGATTGTGAGTGAAAACTGGATTGAGCCACCGAGAAGAGAGCGGAAGCGCAAGTAAACACCAGTCTATATGCTATACTTCAAGCAAACCTTGCGCCAAGGAGGTCCTACTAAACCGAAGGAGCCCCGTATTCCCAGGATGCCTCAACTGCATGATTTCCAGTTTTTCAACACACAAAGGTTGAGTGAGCTGTATGAAAAGGAAGTACGCTATCTCATGCAAACACATCAGAAGAATCAAGTAAAAGACTCCATAGAGGTGGATGAACCAGAAGAGGTGGGAGATCCACTGACTGCTGAAGAGTTGGAAGAAAAGGAGCAGCTGCTAGAGGAGGGTTTCTCATCATGGAGCAGGAGGGATTTTAATACTTTTGTTAGGGCCTGTGAAAAATATGGCCGAAATGATATTAAAGGTATTGCTTCTGAGATGGAAGGAAAAACAGAAGAGGAAGTTGAGAGATATGCGGTGGTCTTCAAAGAAAGATACAAGGAATTAAACGATTATGATAGAATTATTAAAAACATCGAAAGAGGGGAAGCTAGAATATCCCGGAAAGATGAGATTATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCATGGTTAGAACTAAAGATACAATATGGGCAAAACAAAGGGAAGTTATACAATGAAGAATGTGATCGATTCATGATATGCATGATTCACAAACTTGGCTATGGGAATTGGGATGAACTGAAGGCAGCATTTCGAATGTCACCTTTGTTTCGTTTTGATTGGTTTGTTAAGTCTCGCACAACGCAAGAACTAACAAGGAGGTGCGACACCCTCATTCGCCTTGTTGAGAAGGAAAACCAAGAATATGACGAAAGAGAGAGACAGGCTCGTAAGGAGAAGAAACTTGCAAAGAGTAGTACCCCATCAAAGCGTACCATGCCACGACAGACGGAGTCTCCATCTTCGAAGAAGCGCAAGCAGCTGACCATGGATAACTTTGTAAGCTCGGGGAAGAAGAAAAAATAA 3180 0.4264 MGRPSKSQPSSDDEAPSNASDSDSDSGSEEQLPNDQINEQEDDEELEEVARSASSGDDDTAPDEPAGDADDDEQDENNADTEVSKREKARLKEMQKLKKQKIQEILDEQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGAQSSSQKKSKGRGRHASKVTEEEEDEEYLKEEEDGLASTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLYEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERRHIREELLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLVTNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDNAELYDFDDDKDENKFDFKKIVSENWIEPPRRERKRKXTPVYMLYFKQTLRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQVKDSIEVDEPEEVGDPLTAEELEEKEQLLEEGFSSWSRRDFNTFVRACEKYGRNDIKGIASEMEGKTEEEVERYAVVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLAKSSTPSKRTMPRQTESPSSKKRKQLTMDNFVSSGKKKK 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g03470 1059 CDD SANT 839 883 IPR001005 -
Arst1g03470 1059 MobiDBLite consensus disorder prediction 145 173 - -
Arst1g03470 1059 FunFam ISWI chromatin-remodeling complex ATPase CHR11 404 696 - -
Arst1g03470 1059 Coils Coil 84 111 - -
Arst1g03470 1059 SMART sant 938 999 IPR001005 -
Arst1g03470 1059 SMART sant 836 885 IPR001005 -
Arst1g03470 1059 Gene3D - 404 696 IPR027417 -
Arst1g03470 1059 Pfam HAND 750 832 IPR015194 GO:0003677|GO:0006338|GO:0031491
Arst1g03470 1059 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 836 890 - -
Arst1g03470 1059 MobiDBLite consensus disorder prediction 1 34 - -
Arst1g03470 1059 Pfam Helicase conserved C-terminal domain 486 598 IPR001650 -
Arst1g03470 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 398 IPR027417 -
Arst1g03470 1059 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 488 639 IPR001650 -
Arst1g03470 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 681 IPR027417 -
Arst1g03470 1059 MobiDBLite consensus disorder prediction 1 97 - -
Arst1g03470 1059 Gene3D - 158 393 IPR038718 -
Arst1g03470 1059 SUPERFAMILY Homeodomain-like 891 1013 IPR009057 -
Arst1g03470 1059 SMART ultradead3 189 381 IPR014001 -
Arst1g03470 1059 SMART helicmild6 514 598 IPR001650 -
Arst1g03470 1059 FunFam Chromatin-remodeling complex ATPase 194 399 - -
Arst1g03470 1059 Pfam SLIDE 893 1003 IPR015195 GO:0003677|GO:0005634|GO:0006338
Arst1g03470 1059 Pfam SNF2-related domain 206 463 IPR000330 GO:0005524|GO:0140658
Arst1g03470 1059 MobiDBLite consensus disorder prediction 1007 1024 - -
Arst1g03470 1059 ProSiteProfiles SANT domain profile. 835 887 IPR017884 -
Arst1g03470 1059 Coils Coil 986 1020 - -
Arst1g03470 1059 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 155 1046 - -
Arst1g03470 1059 SUPERFAMILY Homeodomain-like 839 889 IPR009057 -
Arst1g03470 1059 CDD DEXHc_SMARCA1_SMARCA5 190 400 IPR044754 GO:0005524
Arst1g03470 1059 Gene3D ISWI, HAND domain 736 835 IPR036306 GO:0003677|GO:0006338|GO:0031491
Arst1g03470 1059 FunFam ISWI chromatin-remodeling complex ATPase CHR11 735 835 - -
Arst1g03470 1059 Gene3D - 924 1027 - -
Arst1g03470 1059 MobiDBLite consensus disorder prediction 1007 1059 - -
Arst1g03470 1059 Gene3D iswi atpase 891 923 - -
Arst1g03470 1059 FunFam ISWI chromatin-remodeling complex ATPase CHR11 924 1027 - -
Arst1g03470 1059 Gene3D - 836 890 - -
Arst1g03470 1059 MobiDBLite consensus disorder prediction 79 97 - -
Arst1g03470 1059 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 750 838 IPR036306 GO:0003677|GO:0006338|GO:0031491
Arst1g03470 1059 CDD SF2_C_SNF 484 609 - -
Arst1g03470 1059 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 370 IPR014001 -
Arst1g03470 1059 MobiDBLite consensus disorder prediction 61 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g03470 Arst-Chr1 95701272 95708839 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g03470 214 625 RAD5 or RAD16-like Gene Family AT1G02670 27.490 1.41e-42 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst1g03470 SNF2_N 3.9e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g03470 K11654 - gmx:100791510 1842.78