Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g03457 ATGGAACGGTACGGCCGTCCCGGCGAAGGGCCGCAGCCTGATCCGCCGCCGGAGTGGAACGTCGGCGCCGGCGACACGGGGCTCGAAGAGTCTATGTGGAAGCTTGGATTGGGTGGTGCCACCGAATCGTACCCTCAGAGGCCTGATGAAGCTGATTGTATCTATTATCTCAAGACAGGTTTTTGCGGCTATGGTTCGCGTTGTCGGTTCAACCACCCACGTGACCGTGGCGCGGTTATTGGAGCTGCCAGGAGTGGAGGGGAGTATCCGGAGCGTGCGGGCCAGCCTCTATGCCAGTATTTTATGAGGACAGGATCATGCAAATTCGGTGCATCTTGCAAGTACAACCATCCTAGGCAGGCAGCAGGAACTCCTACCCTTGTCTCACTAAATTATTATGGATATCCGTTGCGAGTGGTGCGTTTGGTTCCAACTTGAANNNNNNNNNNNNNNNNCTATTACGTGAAAACTGGGCAATGCAAGTTTGGTGCTACTTGTAAATTCCATCATCCACAGCCTGCAGGTGTCCAAATTCCGGCACCATCACCAGTTCCCCCGGTTTCACCTCTACCTGTACAGGTACCTTCTCCATTATATCCAACCGTGCAGCCTCCATCTGGTCCTTCGCAACAGCAATATAGTGTACTGGTTGCAAGGCCTCCGTTGCTGCCTGGCTCATTAGTCCAGGGCCCTTATGGGCCTGTGGTAGTGTCCCCTGCCATGGTCCCCTTTCCAGGCTGGAATCCTTATCAGGCTCAAGCAACAAGCCCCCTACTTCCCTCTAGTACACCATCTAATGTTGGTCCAACACAGCTTTACAGGATAACCCAGCTGCCTTCTCAGGCAACTGGGTATTCTGCACCTTATCAACCTTCTGGCCCCTCTGTTGATCCTTCAGGTAGTAGTACTCAGAAGGAGAACCCATATCCCGAAAGGCCTGATCAACCAGAATGTCAGTATTACATGAAAACAGGGGAATGTAAATTTGGTCCATCATGTAGATATCATCATCCATCAGACCTTAATGCACCGAAGGGAAATGTGGCCCTTAGTCCTGTGGGTCTCCCTTTGCGCCCGGGGGCACCACCTTGCACTCATTATACGCAGCGTGGAATCTGTAAGTTTGGTCCTGCATGCAAATTTGATCATCCCATGGGATCTCTCAGTTACAGCCCATCTGCTTCTTCCTTGGCTGATATGCCGGTTGCACCATATCCCGTGGGTTCCTCAATGGGCACTCTTGCTCCATCATCATCTTCATCAGAGTTGCGGCCTGAACTTGCTTCAGGATTGAGCAAGGAGTCTGTTTCATCCAGAATGTCTTCATCGATGAGCACTTCAAGTGGATCAGTTGGCTTGACCTTGTCAACTGCAGGACCAATTTCTCAATCGGGCACCCAAGCCTCTGCTCAGAGTTCCAGTTCTTCAGCAACTGCCAGCAGCGCCGCAACAAGCAGTGCTGCATCTCACACCTCAAGCTAA 1482 0.5142 MERYGRPGEGPQPDPPPEWNVGAGDTGLEESMWKLGLGGATESYPQRPDEADCIYYLKTGFCGYGSRCRFNHPRDRGAVIGAARSGGEYPERAGQPLCQYFMRTGSCKFGASCKYNHPRQAAGTPTLVSLNYYGYPLRVVRLVPTXXXXXXXYYVKTGQCKFGATCKFHHPQPAGVQIPAPSPVPPVSPLPVQVPSPLYPTVQPPSGPSQQQYSVLVARPPLLPGSLVQGPYGPVVVSPAMVPFPGWNPYQAQATSPLLPSSTPSNVGPTQLYRITQLPSQATGYSAPYQPSGPSVDPSGSSTQKENPYPERPDQPECQYYMKTGECKFGPSCRYHHPSDLNAPKGNVALSPVGLPLRPGAPPCTHYTQRGICKFGPACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSMGTLAPSSSSSELRPELASGLSKESVSSRMSSSMSTSSGSVGLTLSTAGPISQSGTQASAQSSSSSATASSAATSSAASHTSS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g03457 493 SUPERFAMILY CCCH zinc finger 315 339 IPR036855 GO:0046872
Arst1g03457 493 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Arst1g03457 493 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Arst1g03457 493 PANTHER PROTEIN PHOSPHATASE RELATED 36 420 - -
Arst1g03457 493 SMART c3hfinal6 149 172 IPR000571 GO:0046872
Arst1g03457 493 SMART c3hfinal6 358 385 IPR000571 GO:0046872
Arst1g03457 493 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Arst1g03457 493 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Arst1g03457 493 SMART c3hfinal6 312 339 IPR000571 GO:0046872
Arst1g03457 493 ProSiteProfiles Zinc finger C3H1-type profile. 312 340 IPR000571 GO:0046872
Arst1g03457 493 MobiDBLite consensus disorder prediction 411 493 - -
Arst1g03457 493 FunFam CCCH type zinc finger protein 310 395 - -
Arst1g03457 493 ProSiteProfiles Zinc finger C3H1-type profile. 358 386 IPR000571 GO:0046872
Arst1g03457 493 MobiDBLite consensus disorder prediction 390 493 - -
Arst1g03457 493 MobiDBLite consensus disorder prediction 253 309 - -
Arst1g03457 493 ProSiteProfiles Zinc finger C3H1-type profile. 141 173 IPR000571 GO:0046872
Arst1g03457 493 Gene3D - 310 396 - -
Arst1g03457 493 Gene3D - 87 180 - -
Arst1g03457 493 MobiDBLite consensus disorder prediction 253 317 - -
Arst1g03457 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Arst1g03457 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 361 385 IPR000571 GO:0046872
Arst1g03457 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Arst1g03457 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 153 172 IPR000571 GO:0046872
Arst1g03457 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 314 338 IPR000571 GO:0046872
Arst1g03457 493 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Arst1g03457 493 MobiDBLite consensus disorder prediction 1 25 - -
Arst1g03457 493 SUPERFAMILY CCCH zinc finger 95 120 IPR036855 GO:0046872
Arst1g03457 493 SUPERFAMILY CCCH zinc finger 362 388 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g03457 Arst-Chr1 95593571 95598111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g03457 1 460 C2H2 Transcription Factor Family AT5G18550 53.291 1.09e-145 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Arst1g03457 zf-CCCH 9.6e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g03457 - - gmx:100789405 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g03457 1 95593571 95598111 Arst1g03457 1 95593571 95598111 ECH
Arst1g03457 1 95593571 95598111 Arst1g03457 1 95593571 95598111 PCT