Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g03448 ATGGATGAGATTGGGGAGAGTAGCATAAAGGAACAAGAGAAGTTGGTGCCAATAGCGAACGTTGGTCGAATCATGAAGCAAATTCTTCCCCACAACGCCAAGGTTTCCAAGGAAGCCAAAGAAACCATGCAAGAATGTGTGTCGGAGTTCATCAGCTTCGTGACTAGCGAGGCGTCTGACAAGTGCCGGAAGGAGCGGAGGAAGACGGTTAATGGAGATGACATATGCTTCGCTTTGGCCTCTCTTGGCTTCGATGATTATGTTCATCCTATCACAAGGTATTTGCAGAGATTTAGAGAACTTGATCTTGACCATCATCACACTAGAACTAATAGTATTAATCAAGAAAGAGATACACGGAATAGCACCTTTGATGATGATGATGAATAG 390 0.4385 MDEIGESSIKEQEKLVPIANVGRIMKQILPHNAKVSKEAKETMQECVSEFISFVTSEASDKCRKERRKTVNGDDICFALASLGFDDYVHPITRYLQRFRELDLDHHHTRTNSINQERDTRNSTFDDDDE 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g03448 129 Gene3D Histone, subunit A 3 129 IPR009072 GO:0046982
Arst1g03448 129 SUPERFAMILY Histone-fold 12 119 IPR009072 GO:0046982
Arst1g03448 129 PRINTS CCAAT-binding transcription factor subunit A signature 43 61 - -
Arst1g03448 129 PRINTS CCAAT-binding transcription factor subunit A signature 62 80 - -
Arst1g03448 129 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Arst1g03448 129 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6 110 IPR027113 GO:0001228|GO:0006355|GO:0016602
Arst1g03448 129 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 16 79 IPR003958 -
Arst1g03448 129 FunFam Nuclear transcription factor Y subunit B-6 4 121 - -
Arst1g03448 129 ProSitePatterns NF-YB/HAP3 subunit signature. 46 62 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g03448 Arst-Chr1 95483554 95484097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g03448 9 109 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.845 5.58e-52 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Arst1g03448 CBFD_NFYB_HMF 5.5e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g03448 K08065 - gmx:100794513 172.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g03448 1 95483554 95484097 Arst4g01454 4 18569253 18569615 PCT