Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g03298 ATGACATACCACAACTCTCGTCGGAGCCCCGCGCACTTCCGCTCTGGAGGCCGCGGCTTCCACAGCTCGCCACGTCGCTCTCCCGCTGGGCCTGGAGGTTTCCACCCAATCGGCCCCGGCGAAGGGTTCGGGCCGATGGGTGGTGACGGTTACGGAGAATACGGGTTCAATACTTACCAGGCTCCTCCTCCGCAGCTGTCTGGTCACAAGCGAGGGTTTCGTGGAGTTTCGCCAGATCGTTTTGATGGTGGAAACTTTGCCAAACTATTTGTTGGATCTGTGCCCCGAACAGCCACTGAAGAAGATATTCGACCTTTGTTTGAGGAACATGGGAATGTGATTGAGGTCGCGCTGATCAAGGATAAAAAAACTGGGCAGCATCAAGATTTTTGTTGTGCAGGTTGTTGTTTCATAAAATATGCTACCTCAGAAGAAGCTGATCAGGCAATTAGAGCATTACACAATCAGCATACCCTTCCTGGAGGTGTTGGTCCTATCCAAGTACGCTATGCTGACGGGGAGCGGGAACGGCTTGGTGCAGTTGAGTACAAATTATTTGTGGGATCTCTGAACAAACAAGCTACAGTGAAGGAAGTTGAGGAAGTTTTCTCAAAATATGGGCGGGTTGAAGATGTTTATCTCATGCGTGATGAGAAAAAGCAAAGCCGTGGATGTGGTTTTGTTAAATATTCGCATAGGGATATGGCATTGGCAGCTATAAATGCACTGAATGGGATTTATACAATGAGAGGTTGTGATCAACCTCTAATTGTGCGGTTTGCTGATCCCAAGAGACCTCGTCAAGGAGATTCTAGGGGTCCTGCACTTGGTGGCCCAGGATATGGTTCTAGATTTGATGCACCAGGCCCAAGATTTCCATCAAATATTACTGATCCCATGGGTGATCGTATGCCTCCTCCTAATGCTTGGCGTCCAATGCATGCACCAAATATGGGCCCATCTCCGAATGCTGGTTTTCGTGCGGTGGGGCCTCCAATGCTTCCAAGGTCTGGTGACATGGCATTGCCTACAAATCCAGGTGGTCCTATGACTGGCATGGGAGGTCCAATAGATGACCGTTTCCAAGTGCAAAATTTTCCACCATTTTCACAACAGAATTTCAACCAGCCTATGCCACAAATTCCACCAGCCAGCCAGCAACAACAAATAGCACCATTGCACAAACCGACACAATCTTCTCAGGAGTTGCCTCCTTCCCACCAGTTGTACCCTCAAGGTCCGACACCCTACTTACAAACTCCACCACCTTCATCTGTACGGCATCCTGGCCAGCCACAACTTCCACTCACTGCTGGTTCTCTACCTTCACAGCAGATTCATAGCATGAGTGGGCAGTTCCCAACTTCACAACCCCAAGCTCAGCAGAGTTCTTTGGCTACTGCATTTCCTCAGGCACCTCTTGATACTAGCGGAAAATCTGGTACAACTTTGGCTACCTCAAATAAACAGCAAGTTCCCACTGGGCAGCAGCAGACAGTTCAACCTCTTCAGCAATCCCCCTCTCAGTTAGCTCAGATGCTGTCACAGCAAACTCAGACTTTACAAGCAAGCTTTCATTCCTCCCAGCAGGCCTTCTCCCAGCTCCAACAACAACTACAGATGATACAGCCATCTAGTCAGGCTAATACATTGCAGCAAAATTCAGAAGCTACTAAAAATCAGTCTCAATGGGCTGGAACCATACCGCAGACCATGGTCAGCACTGCTGCAGAAATGCCTTCCTCTGCATCTGCTTCTGCTTCTGCTGCTGTACCAGTGGTAAGCCCAAACACAGCTATTGTGAAATGTAATTGGACAGAGCATTTATCTCCAGAGGGTTTCAAGTATTACTACAATAGTGTCACTGGTGAAAGTAGGTGGGAGAAACCAGAGGAGTTGACATTATATGAACAGCAAAAGCAACAGCAAATGATGTCTATGCAGCAGTCTCAGTCTCAGTCACAGTCACAGCCTTCAGTAGTATCTGCTCAGCAACTTCCTCAAGTCCAACAGGTTCAGCCTCAAGGTAATCAAGGCCGGGTTCTCCACCATCAACAAATGCAGCAGCCCCCGGTGTTCCAGGCATACGGAGTTACAGGTCACCAAGGTATTCAGGATTATAAACAGATACAGGCATCTGGAATTTCTGCTGTTGATGCTGGACGCTACTCTCAGGGCATCCAAACTTCTCAAGAGTGGATGTGGAAAAATAAGCCTGCAGGAGTTTGA 2229 0.485 MTYHNSRRSPAHFRSGGRGFHSSPRRSPAGPGGFHPIGPGEGFGPMGGDGYGEYGFNTYQAPPPQLSGHKRGFRGVSPDRFDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDKKTGQHQDFCCAGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEVFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLIVRFADPKRPRQGDSRGPALGGPGYGSRFDAPGPRFPSNITDPMGDRMPPPNAWRPMHAPNMGPSPNAGFRAVGPPMLPRSGDMALPTNPGGPMTGMGGPIDDRFQVQNFPPFSQQNFNQPMPQIPPASQQQQIAPLHKPTQSSQELPPSHQLYPQGPTPYLQTPPPSSVRHPGQPQLPLTAGSLPSQQIHSMSGQFPTSQPQAQQSSLATAFPQAPLDTSGKSGTTLATSNKQQVPTGQQQTVQPLQQSPSQLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMIQPSSQANTLQQNSEATKNQSQWAGTIPQTMVSTAAEMPSSASASASAAVPVVSPNTAIVKCNWTEHLSPEGFKYYYNSVTGESRWEKPEELTLYEQQKQQQMMSMQQSQSQSQSQPSVVSAQQLPQVQQVQPQGNQGRVLHHQQMQQPPVFQAYGVTGHQGIQDYKQIQASGISAVDAGRYSQGIQTSQEWMWKNKPAGV 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g03298 742 PANTHER RNA BINDING PROTEIN 65 550 - -
Arst1g03298 742 Gene3D - 601 646 - -
Arst1g03298 742 MobiDBLite consensus disorder prediction 638 666 - -
Arst1g03298 742 MobiDBLite consensus disorder prediction 349 511 - -
Arst1g03298 742 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Arst1g03298 742 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 251 IPR000504 GO:0003723
Arst1g03298 742 SUPERFAMILY RNA-binding domain, RBD 183 284 IPR035979 GO:0003676
Arst1g03298 742 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 263 IPR000504 GO:0003723
Arst1g03298 742 SMART ww_5 600 632 IPR001202 GO:0005515
Arst1g03298 742 MobiDBLite consensus disorder prediction 364 408 - -
Arst1g03298 742 MobiDBLite consensus disorder prediction 262 298 - -
Arst1g03298 742 MobiDBLite consensus disorder prediction 409 429 - -
Arst1g03298 742 CDD WW 602 632 IPR001202 GO:0005515
Arst1g03298 742 MobiDBLite consensus disorder prediction 1 46 - -
Arst1g03298 742 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 173 IPR000504 GO:0003723
Arst1g03298 742 FunFam flowering time control protein FCA isoform X2 81 178 - -
Arst1g03298 742 Pfam WW domain 603 630 IPR001202 GO:0005515
Arst1g03298 742 SMART rrm1_1 184 259 IPR000504 GO:0003723
Arst1g03298 742 SMART rrm1_1 88 169 IPR000504 GO:0003723
Arst1g03298 742 FunFam Flowering time control protein FCA 179 269 - -
Arst1g03298 742 MobiDBLite consensus disorder prediction 436 511 - -
Arst1g03298 742 ProSitePatterns WW/rsp5/WWP domain signature. 605 630 IPR001202 GO:0005515
Arst1g03298 742 SUPERFAMILY RNA-binding domain, RBD 62 177 IPR035979 GO:0003676
Arst1g03298 742 ProSiteProfiles WW/rsp5/WWP domain profile. 599 632 IPR001202 GO:0005515
Arst1g03298 742 SUPERFAMILY WW domain 604 637 IPR036020 GO:0005515
Arst1g03298 742 Gene3D - 83 178 IPR012677 -
Arst1g03298 742 Gene3D - 179 271 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g03298 Arst-Chr1 94101253 94110795 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g03298 86 269 Eukaryotic Initiation Factors Gene Family AT1G71770 25.500 9.27e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g03298 - - gmx:100798390 940.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g03298 1 94101253 94110795 Arst1g03298 1 94101253 94110795 ECH