Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g03173 ATGATGTCGAGCTGCAGCATGGATGCTGGACCTGAGCAACTGTGCTACATACCCTGCAACTTTTGCAACATTGTTCTTGCGGTGAGCGTTCCATGCACCAGCTTGTTCGACATGGTAACGGTTCGATGCGGTCACTGCACCAATCTCTGGTCCGTAAACATGGCTGCGGCCTTTCAATCACTCTCATGGCAAGATCTTCAGGGCCCTGGGCAGTGCAATCAGGAGTATAGGATTGACACAAATATTAATATGAATAATGGTGGCTCCTCTTCCAAATGCAACAATAGTAGTAGGCTTGCATCAATGCGTGCACCTACCAATCATGTTACTCAGGAAAGGGCTGTCAACCGCCCACCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAATCAGTTCATAAAGGAAGAGATCCAGAGGATTAAGGCTAATAATCCTGATATCAGTCACAGAGAAGCATTCAGTACTGCAGCAAAGAACTGGGCACATTTTCCTCATATTCATTTTGGGCTAATGTTGGAGGAGAAGCATTTGATGTCAAGGGCTGCACCTGCACTGTTGAATAAATGA 567 0.4674 MMSSCSMDAGPEQLCYIPCNFCNIVLAVSVPCTSLFDMVTVRCGHCTNLWSVNMAAAFQSLSWQDLQGPGQCNQEYRIDTNINMNNGGSSSKCNNSSRLASMRAPTNHVTQERAVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLEEKHLMSRAAPALLNK 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g03173 188 Pfam YABBY protein 11 170 IPR006780 GO:0007275
Arst1g03173 188 PANTHER PROTEIN YABBY 6-RELATED 2 176 IPR006780 GO:0007275
Arst1g03173 188 FunFam axial regulator YABBY 5-like 108 166 - -
Arst1g03173 188 SUPERFAMILY HMG-box 115 164 IPR036910 -
Arst1g03173 188 CDD HMG-box_SF 124 160 - -
Arst1g03173 188 MobiDBLite consensus disorder prediction 102 123 - -
Arst1g03173 188 Gene3D High mobility group box domain 107 179 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g03173 Arst-Chr1 93216004 93218846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g03173 12 173 C2C2-YABBY Transcription Factor Family AT2G26580 72.222 1.05e-80 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Arst1g03173 YABBY 3.6e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g03173 K25796 - gmx:100499942 314.694