Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g03079 ATGGGTTCCGCCACCAGTAGACTAGACGGTTCTCGCCCTCCCACGGCGAGGCTCAACCGCAACAACACACGCTTCAGCCTCTCCTCTCTTCTCTGCGGTGCTTCCACCTCTCGCTCCACCTATCAGATGGAAGAACATCCATCTGAACTTCAGGTAGATTTAGCAACAGAACCTGATGGTGGAACTCAGGAAATCACTGAGGAATCATCTTTATCATGTACAGAAGCTAGAATCAGCTGCAGCCACCATGCTGAAGCCGCTACCTCATCCAATACAAGAACCGAGTCTCATCAGCATATTGGTATTGAAGGTTCTTCCATAAATGTTGCAGCAAGTAGTCAGAGGAAGTGCTTGTCTGAATGTAAGGAGCTAGTCCCTCCTCATCAGGTAAGTGCTGGTCATAGTGGTAATGAATCATATAGGGATAGTAGCAATACAGCTAGTACTTCTTTTGTAGAGCAACAATCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAAGATGGAGTCAATAATGTTGATGATCCAGTGGTTAGTGGTGTATCTCAAATCTCTCATGAGACAGTGCATCCATGGAGTTCGAGCCCTCAGGAGAATGGATATTTTAGTTCTGGGGAAATTTCTGTTGAGAATGATGCATTAATGGCTACCCAGAGTCCTTCTTCGGATCCCGTTTCTCAAGTTTCCACTTTACCGGCACCTTCTCCTATGCCCGAAGATGAACCTCGCAGAGAGGCAATACCTTCAGGATGATAGTGTGCTTCAAGTTGATGTTGTCACAATATCCTCCAACATCTTGTCTGGCAGCACTGCTGATGCCAATGATCATGATACCGGAAGGAGTGGTAGAAGAATATTTTGGGATGCTTTTTCACGGCGTAGTTCTAGAAGGCTTGGCGACTCTCAAACAATTGTGTTCTCTGCTGGCGGTGCCGATGATCCTAGATCTCAAGATAGATGGCTTGTTGATCTTGGTGGGGATTTCTCCAACGATGGGTTTGGAGGTGCTTCTTCTGGATATGTGGGCAGTAGAATTCACAGATTTAATGAAAGAATGCGGCACTCAAGATCAGAGATCTGGGAAAGGCTTCGAGGTGGCCTTGATGATTTTGGTCGTTTGAATTCTTCATGTCCATCAGGACTTCATGCAGATGGTATGTGCTCATGTGAGTCTTTACCAGCAGCTGAAGAATCTAGCACTCGAGCAAGTATTTCAAGAATTGTCATGCTGGCTGAAGCTCTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGTATCGCTTTCCCTTCTCACAAAAAGGTCGATGCAGCTGACGGTGGCAGTGATGCTGAACAATGTTACATATGTTTGGCGGAGTATGAAGAAGGGGACCAAATTCGAGTTCTTCCTTGCAACCATGAGTATCACATGTCGTGCGTTGATAAGTGGCTTAAAGAAATACATGGCGTATGCCCTCTTTGTCGTGGCAATGTTTGTGGAGGGTTCACGGAGTCTTCTACCAACTCAGTGCCATCTCATTGA 1527 0.4578 MGSATSRLDGSRPPTARLNRNNTRFSLSSLLCGASTSRSTYQMEEHPSELQVDLATEPDGGTQEITEESSLSCTEARISCSHHAEAATSSNTRTESHQHIGIEGSSINVAASSQRKCLSECKELVPPHQVSAGHSGNESYRDSSNTASTSFVEQQSSDPVSVNVSANKDGVNNVDDPVVSGVSQISHETVHPWSSSPQENGYFSSGEISVENDALMATQSPSSDPVSQVSTLPAPSPMPEDEPRREAIPSGLGILVSNRERVQGNDSVLQVDVVTISSNILSGSTADANDHDTGRSGRRIFWDAFSRRSSRRLGDSQTIVFSAGGADDPRSQDRWLVDLGGDFSNDGFGGASSGYVGSRIHRFNERMRHSRSEIWERLRGGLDDFGRLNSSCPSGLHADGMCSCESLPAAEESSTRASISRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESVVDSFPLKSHKKVDAADGGSDAEQCYICLAEYEEGDQIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSTNSVPSH 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g03079 540 FunFam Putative RING zinc finger domain superfamily protein 447 527 - -
Arst1g03079 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 445 526 IPR013083 -
Arst1g03079 540 MobiDBLite consensus disorder prediction 217 246 - -
Arst1g03079 540 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 534 - -
Arst1g03079 540 SMART ring_2 480 521 IPR001841 -
Arst1g03079 540 MobiDBLite consensus disorder prediction 1 22 - -
Arst1g03079 540 MobiDBLite consensus disorder prediction 217 234 - -
Arst1g03079 540 ProSiteProfiles Zinc finger RING-type profile. 480 522 IPR001841 -
Arst1g03079 540 MobiDBLite consensus disorder prediction 132 170 - -
Arst1g03079 540 Pfam Ring finger domain 479 522 IPR001841 -
Arst1g03079 540 MobiDBLite consensus disorder prediction 127 175 - -
Arst1g03079 540 SUPERFAMILY RING/U-box 467 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g03079 Arst-Chr1 92344740 92348097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g03079 394 526 C3H Transcription Factor Family AT5G45290 54.422 3.16e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g03079 - - gmx:100783604 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g03079 1 92344740 92348097 Arst1g03079 1 92344740 92348097 ECH