Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g03066 ATGGCTTTCCACGAGCACCATATGCAGCACGAGATAGCGTTTCAGCGCTTCACCGAGGAGCAAGAACTAACAGCAGAGAATAGGGACATGCAGCAGCAGAGGGCGGCGGGGGTGGTTGCGCCGCCGACGTGGCTCAACAACCCTAGCAGTCATCATCATCGACAGCAGCAGAATTTCCTGCACCAGCTGCAACCACCACCACCACCACCACCGGAGACAGCGACGACGACGGAGAAGAGCATGGATCGGAACACAAGTTTCGAATCGTCGGATGAATTGAGGGAATACAAAGCAGACATCTTAGGACACCCGCTGTACGACCAGCTTCTGTCGGCTCATGTTTCTTGCCTGAGAATCGCCACACCGGTTGACCAGCTTCCACGGATCGACGCGCAGTTGCAGCAGTCGCAGCGGGTCGTTGATAAGTACTCTGCCCTCGCAAACCCTGTCGTTGATGACAAGGAGCTCGATCACTTCATGACACATTATGTTCTGCTGCTATGTGCGTTCAAGGAACAGTTGCAGCAACATGTCCGTGTTCATGCCATGGAAGCAGTGATGGCTTGTTGGGATCTTGAGCAGTCTCTACAAAGCTTGACCGGTGTATCTCCTGGGGAAGGAACGGGAGCAACAATGTCGGACGACGAAGATGAGCAAGCGGAGAGCAACGGTGGCGGCGGCGGAGGCGGGGGGAACCTATACGAAGGAAGCTTTGACGGTGTTGATAGTCTTGGTTTTGGTCCTCTTGTGCCGACTGAGAGTGAAAGATCGTTGATGGAGCGAGTGAGGCATGAACTGAAGCATGAACTCAAACAGGGTTACAAGGAGAAGATCGTTGACATCCGTGAAGAGATTCTCCGCAAGAGAAGAGCTGGCAAGCTTCCTGGTGACACCACCTCCCTTCTCAAAGCTTGGTGGCAATCACATTCTAAATGGCCCTACCCTACTGAGGAAGACAAGGCCAGGCTGGTGCAGGAAACTGGATTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTAACCCCTCTTCCTCTAGTAACTCTAAAACCAAGCGCAAGAGTGCAGGTGAGAGCAGTAACCAAAGCTTCATGTGA 1119 0.521 MAFHEHHMQHEIAFQRFTEEQELTAENRDMQQQRAAGVVAPPTWLNNPSSHHHRQQQNFLHQLQPPPPPPPETATTTEKSMDRNTSFESSDELREYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSALANPVVDDKELDHFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDEQAESNGGGGGGGGNLYEGSFDGVDSLGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSNSKTKRKSAGESSNQSFM 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g03066 372 MobiDBLite consensus disorder prediction 41 89 - -
Arst1g03066 372 ProSiteProfiles ELK domain profile. 265 285 IPR005539 GO:0003677
Arst1g03066 372 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 50 358 - -
Arst1g03066 372 Gene3D - 291 368 - -
Arst1g03066 372 SMART HOX_1 287 352 IPR001356 GO:0003677
Arst1g03066 372 MobiDBLite consensus disorder prediction 342 372 - -
Arst1g03066 372 SMART KNOX2_2 146 201 IPR005541 GO:0003677|GO:0005634
Arst1g03066 372 FunFam homeobox protein knotted-1-like 3 isoform X1 286 347 - -
Arst1g03066 372 CDD homeodomain 288 349 IPR001356 GO:0003677
Arst1g03066 372 ProSiteProfiles 'Homeobox' domain profile. 285 348 IPR001356 GO:0003677
Arst1g03066 372 Pfam KNOX1 domain 96 137 IPR005540 GO:0003677|GO:0005634
Arst1g03066 372 SUPERFAMILY Homeodomain-like 287 352 IPR009057 -
Arst1g03066 372 Pfam Homeobox KN domain 305 344 IPR008422 GO:0003677|GO:0006355
Arst1g03066 372 SMART ELK_2 265 286 IPR005539 GO:0003677
Arst1g03066 372 Pfam KNOX2 domain 150 200 IPR005541 GO:0003677|GO:0005634
Arst1g03066 372 MobiDBLite consensus disorder prediction 43 61 - -
Arst1g03066 372 Pfam ELK domain 265 286 IPR005539 GO:0003677
Arst1g03066 372 SMART KNOX1_2 94 138 IPR005540 GO:0003677|GO:0005634
Arst1g03066 372 MobiDBLite consensus disorder prediction 200 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g03066 Arst-Chr1 92207216 92211607 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g03066 96 367 Homeobox Transcription Factor Family AT5G11060 81.949 2.73e-162 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Arst1g03066 KNOX2 1.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g03066 - - gmx:100781997 576.63