Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g03056 ATGCCGGACGGAGAATCCTCTTCCGCCACGTCATCGCCGGAGCTGGAGCCCCATTTAAGCGTCGCTGAATACTTGCTGCAGAACCTTAGTCTCTCTGAAGTCAAAGATCATGACGACCAAGCTGTTCAGAAAGACCCCAGAAAAATTGCCAGAAGGTACCAGTTGGAGCTGTGCAAAAAAGCATTAGAAGAAAATATAATTGTATATTTGGGGACTGGTTGTGGGAAGACCCACATTGCTGTGCTGCTTATGCATGCGATGGGTCATTTGATAAGGAAGCCCCAGAAAAATATATGTATTTTTCTTGCCCCTACTGTGGCGCTTGTTCATCAGCAAGCGAAGGTTATAGAAGACTCTACTGATTTTAAGGTTGGGACTTTCTGTGGGAGCTCCAAGCGCTTGAAACGTCATCATGATTGGGAGCAGGAAATTGGACAGTATGAGGTTCTTGTCATGACCCCCCAGATATTATTGCACAACTTATCTCATTGTTCCATTAGGATGGACATGATTTCACTTTTGATATTTGATGAATGTCATCATGCTCAAGCCAAAAGCTCCCATCCTTATGCAGAAATCATGAAAGTCTTCTACAAAAATAGTTTCAAAAGTGTTCCCCGTATTTTCGGCATGACTGCTTCCCCAGTTGTAGGAAAAGGGGCTTCCAATGAAGCAAATCTATCAAAAAGCATCAATAGTCTTGAACAAATACTTGATGCTAAGGTATACTCAGTTGAAGACAGGGAATTGCAATCTTTTGTGACCAATGCAACAATTTCTGTATATCATTATAGCTCAGTTGCAAATGGAACAGATAGCTTGTATACAACTTACCATGCAGATCTTGATCTGATCAAATATCAGTGCATAGCAAGCCTCGGTAGGAATGTAGAAGATCACCAGAAACGGGTGAACACAAAAAAACTTCTAAACAGGATACATGAGAATGTTGTTTTCTGTCTGAGGAATATTGGCATTTGGGGAGGACTGCAAGCTAGTCATATTCTTTTGAGGGGCGATCGTTCCGAGAGGCATGAATTAGTGGAGGCAGAAGGAAATTCAAGTGATGACTCTGTGTGTGATAAATATCTATCTCAGGCAGCTGAACTCTTTAACTCACGTCTGAAAGGTGACGGTGTATCTGATTTATCTTCTATGGAAATAATGAGAGAGCCCTTTTTCTCATCAAAACTTTTGCGCCTCGTTCAGATACTGTCCTCCTTTAGGATGCAACAGAACCCAAAATGTATCATTTTTGTTAATAGAATCGTGACTGCAAGATCCCTGTCATACATACTTAAGAAGATGAAACTTCTAACACAATGGAGGAGTGATTTTCTAGTAGGAGTCCATGCTGGATTGAAGAGTATGTCACGCAAGACCATGAACATCATTGTTGAGAAGTTTCGCTCTGGTGAGTTGAATCTATTGGTTGCAACAAAAGTGGGTGAAGAAGGACTTGACATTCAAACTTGTTGCCTTGTCATACGGTTTGATCTTCCTGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCACGTATGCCTCAGTCAGAATATGCATTTTTGGTGGACAGTGACAATAAGAAGGATCTCGATTTAATTGATGGTTTTGAGAAAGATGAATGCCGCATGAATATGGAAATTGCTGACCGTACATCAACTGAGACATACATAATCCCTGAGGAAAGAATATTCAGAGTAGATTCGTCTGGTGCTTCTGTCAGTTCTGGATATAGTATTTCATTACTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTACTTTGACCCCAAGCCAAGCTTTTATTACTTTGATGAAAAAGATGGGATAGTCTGCCACATAATATTTCCATCCAATGCACCAATACACTTAATTGTCAGTTCACCACAGTTGTCTATGGAAGCTTCCAAAAAGGATGCTTGCCTGAAAGCAATTCAAGAACTGTATGAAAAAGGTTCGTTAAGTGATTGTCTTTTGCCAAAGCAAGAGACCACAGAGCCAGAGGAGAAGGATTCAAGCCCATCTAATACAGATGGTTGTGAAGATGACAAGTCAAGAGGAGAATTACATCAGATGTTAGTTCCTTCTCCCTTTAGAAAGTCTTGGATAAACGAAGAGAAAATTGTTCATCTCAACTCATACTACATAAAATTTCGCCCCTTTCCAGAGGATAGGGTTTACAAAAAGTTTGGTCTATTCATCATGACATGTCTTCCAGCAGAGGCTGAGAAACTGGAACTTGATCTTCATCTTGCTCATGGTAGATCTGTTAAATCAACATTTGTTCCATTTGGAGTTGTAGAATTCGACAAAGATGAGATTAAGATGGCTGAACATTTTCAAGAGATGTTCCTTAAAACTATTCTTGACCGATCAGAATTTGTTTCTGATCTTGTAACCCTGGGTAAAGGTGCTGAATCTCACAATGATTCATCAACCTTCTACCTTATGCTTCCAGTTGTATTGCAAGAATATGAAAATATTATGACTGTGGATTGGAAGACTGTGAGAAGATGCCTTTGTTCACCAATTTTCAAGTCTCCACCAGATGCTGTGGACCAAAAGCCTTGTCCTTCTGATTCATCACTTCAACTTGCCAATGGTAAAAGAAGCATAAGAGATGTTGAAAATAGTTTGGTATATGCCACACACAAAAAGCTCTTCTATTTTGTCACAAATGTGAACCATGAAAAGAATGGATTAAGTCCCAGTAAAGATTCAGGCACTTCAAGCTATGCGGATGACTTACTTGAAAAGTTTAGTATTCATCTCAAACACCCAGAACAGCGACTGCTGCATGCAAAACCAGTTTTCAATCTGCACAACCTGCTGCATAATCGGAAGTATGAGGATACAGAGCCACAGGAGCTGGAGGAGTTCTTTGTTGATTTGCCTCCTGAGCTTTGCGAACTGAAAGTTGTGGGTTTTTCGAAGGATATGGGTAGTTCCATATCTTTGCTACCCTCAGTTATGCATCGTCTTGGAAACTTACTGGTTGCTATTGAACTCAAGCAAATGCTGTCTCGATTCTTCCCAGAGGCAGCTGAAATTAACTCCCATACAATTCTTGAAGCTCTCACAACTGAGAAGTGTCAGGAACGGTTTTCGCTTGAAAGACTAGAAGTGCTTGGAGATGCTTTTCTCAAATTTGCTGTTGCACGCCATTTTTTCCTCACATATGACAGTCTTCATGAAGGAGACCTTACTGCAAGGCGTTCTAATGTTGTAAATAATTCCAATTTGTATAAGTTGGCTCTTAAACGCAATTTGCAGGTCTATATACGTGATCAGGCGTTTGATCCCTGTCAATTCTACGCATTTGGCCGTCCTTGCCCAATAGTTTGCAACAATGAAATGGAAGAAAGTATACACTCATGTTTAAATTCTGTTAAGGAGCAAGGAAGCTCAACTGAAATCCAGTGCAATAAAAATCACCACTGGCTATATAGAAAAACAATTGCTGATGCAGTTGAAGCTTTGGTTGGAGCATTTATAGTTGACAGTGGCTTTAAAGCTGCAATTGCATTTCTTACGTGGCTTGGCATACAAGTTGGTTTTGAAGCCTCACAATTGATTAATGTTTGCCGAGGAAGTGTTGGCTATATTCCTCTCTCTGCTGATGTAAACATTCTTTCCCTCGAAGATAAGTTGGGATATCACTTCATTCATAAGGGTCTGCTTCTTCAGGCATTTGTGCATCCTTCTTACAATAAGCATGGAGGAGGTTGCTACCAGCGACTGGAGTTTCTTGGAGATGCTGTGCTGGATTTTTTGATTACTTCATACCTGTACTCAGCTTATCCCAAGCTAAAGCCTGGTCAATTGACGGATTTGAGATCGTTGTCTGTTAACAATAAGGCATTTGCCTGTGTTGCTGTGGATCGCAGTTTTGATAAATTTCTTTTATGTGATTCTAGCAACCTTTCTGAGGCAGTAAAAAAGTATGTGGACTATATTAGAAGACCTTTATCAAGTAATGTCAATGAAGGGCCGAAATGTCCAAAGGCTTTGGGTGACTTGGTGGAATCTTGTGTTGGTGCTATTCTTCTTGATTCAGGGTTCAATTTGTACAAAGTTTGGGAAATAATGACTTCATTCTTGGATCCAATCATGAAATTCTCATCTAACTTGCAGCTTAGTCCCAAGAGGGATCTGCAAGAACTATGCCAATCTCATAATTTGGACTTGCAACTCCAACCATCAAAATTGACTAAAATGTTTTCAGTTGAAGCAAAAGTGATTGTGAATGGTACATGTCAAACAGCAGTGGCAACCGGGCAAAGTAAAAAAGAGGCTACTAGAATTGCTTCACAGAAACTATTTTCAGAGCTAAAGGCTCAAGGCTGGAGACCAAGGTCAAAACCTTTGGAAGAAGTTTTAAAATCTACCTTTAAGGGGGAAGCAAAACTTATTGGCTATAATGAAACTCCCATTGATGTAACAGCAATTAATTCCATTGAGCACGTGATGGTTAATGGGAACTTAAGTAGCAACTCAAACCCGATAATTCGCCCCCTCCGTGAGGTGATTGGTATAAAACCTGTTGACCAAAAGGTTCAACATTCTTCTAAGGGACAGCCTAGTGGAACTTATGATAATCGTGATTGTGCCGGTGATTTATCGAGGACAGGAACCGCAAGATCACGATTGTATGAATTCTGTACTGCTTCTTGCTGGAAACCACCGACATTTGAGTGCTGCTATGAAGGGGGACCAGATCACATGAAGTTATTCACATACAAGGTGACCTTGGACATAGAAGAATCCCCAGATGTGATTTATGAATTCATTGGGGAACCAAAACCGAAGAAGAAAGACGCAGCAGAGTCCGCGGCTGAGGGTGTGTTTTGGTACCTGGAACGCACAGGTTACCTGCCTAATAAGCGTAACTAA 4902 0.4062 MPDGESSSATSSPELEPHLSVAEYLLQNLSLSEVKDHDDQAVQKDPRKIARRYQLELCKKALEENIIVYLGTGCGKTHIAVLLMHAMGHLIRKPQKNICIFLAPTVALVHQQAKVIEDSTDFKVGTFCGSSKRLKRHHDWEQEIGQYEVLVMTPQILLHNLSHCSIRMDMISLLIFDECHHAQAKSSHPYAEIMKVFYKNSFKSVPRIFGMTASPVVGKGASNEANLSKSINSLEQILDAKVYSVEDRELQSFVTNATISVYHYSSVANGTDSLYTTYHADLDLIKYQCIASLGRNVEDHQKRVNTKKLLNRIHENVVFCLRNIGIWGGLQASHILLRGDRSERHELVEAEGNSSDDSVCDKYLSQAAELFNSRLKGDGVSDLSSMEIMREPFFSSKLLRLVQILSSFRMQQNPKCIIFVNRIVTARSLSYILKKMKLLTQWRSDFLVGVHAGLKSMSRKTMNIIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSDNKKDLDLIDGFEKDECRMNMEIADRTSTETYIIPEERIFRVDSSGASVSSGYSISLLHQYCSKLPHDEYFDPKPSFYYFDEKDGIVCHIIFPSNAPIHLIVSSPQLSMEASKKDACLKAIQELYEKGSLSDCLLPKQETTEPEEKDSSPSNTDGCEDDKSRGELHQMLVPSPFRKSWINEEKIVHLNSYYIKFRPFPEDRVYKKFGLFIMTCLPAEAEKLELDLHLAHGRSVKSTFVPFGVVEFDKDEIKMAEHFQEMFLKTILDRSEFVSDLVTLGKGAESHNDSSTFYLMLPVVLQEYENIMTVDWKTVRRCLCSPIFKSPPDAVDQKPCPSDSSLQLANGKRSIRDVENSLVYATHKKLFYFVTNVNHEKNGLSPSKDSGTSSYADDLLEKFSIHLKHPEQRLLHAKPVFNLHNLLHNRKYEDTEPQELEEFFVDLPPELCELKVVGFSKDMGSSISLLPSVMHRLGNLLVAIELKQMLSRFFPEAAEINSHTILEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLTYDSLHEGDLTARRSNVVNNSNLYKLALKRNLQVYIRDQAFDPCQFYAFGRPCPIVCNNEMEESIHSCLNSVKEQGSSTEIQCNKNHHWLYRKTIADAVEALVGAFIVDSGFKAAIAFLTWLGIQVGFEASQLINVCRGSVGYIPLSADVNILSLEDKLGYHFIHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDFLITSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRSFDKFLLCDSSNLSEAVKKYVDYIRRPLSSNVNEGPKCPKALGDLVESCVGAILLDSGFNLYKVWEIMTSFLDPIMKFSSNLQLSPKRDLQELCQSHNLDLQLQPSKLTKMFSVEAKVIVNGTCQTAVATGQSKKEATRIASQKLFSELKAQGWRPRSKPLEEVLKSTFKGEAKLIGYNETPIDVTAINSIEHVMVNGNLSSNSNPIIRPLREVIGIKPVDQKVQHSSKGQPSGTYDNRDCAGDLSRTGTARSRLYEFCTASCWKPPTFECCYEGGPDHMKLFTYKVTLDIEESPDVIYEFIGEPKPKKKDAAESAAEGVFWYLERTGYLPNKRN 1633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g03056 1633 Gene3D - 50 286 IPR027417 -
Arst1g03056 1633 Hamap Ribonuclease 3 [rnc]. 1216 1444 IPR011907 GO:0003723|GO:0004525|GO:0006364
Arst1g03056 1633 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1383 1449 IPR014720 -
Arst1g03056 1633 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1548 1624 IPR014720 -
Arst1g03056 1633 Pfam Type III restriction enzyme, res subunit 57 215 IPR006935 GO:0003677|GO:0005524|GO:0016787
Arst1g03056 1633 Gene3D - 1384 1453 - -
Arst1g03056 1633 PANTHER DICER-RELATED 63 1452 - -
Arst1g03056 1633 PANTHER DICER-RELATED 63 1452 - -
Arst1g03056 1633 SUPERFAMILY dsRNA-binding domain-like 1548 1628 - -
Arst1g03056 1633 MobiDBLite consensus disorder prediction 1519 1540 - -
Arst1g03056 1633 CDD DEXHc_dicer 48 247 - -
Arst1g03056 1633 SMART ultradead3 46 251 IPR014001 -
Arst1g03056 1633 Gene3D - 389 551 IPR027417 -
Arst1g03056 1633 Pfam Ribonuclease III domain 1248 1356 IPR000999 GO:0004525|GO:0006396
Arst1g03056 1633 Pfam Ribonuclease III domain 1041 1172 IPR000999 GO:0004525|GO:0006396
Arst1g03056 1633 Gene3D paz domain 862 974 - -
Arst1g03056 1633 SMART helicmild6 427 517 IPR001650 -
Arst1g03056 1633 CDD RIBOc 1229 1378 IPR000999 GO:0004525|GO:0006396
Arst1g03056 1633 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1549 1623 - -
Arst1g03056 1633 Pfam Dicer dimerisation domain 581 667 - -
Arst1g03056 1633 Gene3D - 1555 1625 - -
Arst1g03056 1633 MobiDBLite consensus disorder prediction 665 689 - -
Arst1g03056 1633 FunFam Endoribonuclease dicer-like 1 1208 1377 - -
Arst1g03056 1633 FunFam Endoribonuclease dicer-like 1 388 551 - -
Arst1g03056 1633 Pfam PAZ domain 876 997 IPR003100 GO:0005515
Arst1g03056 1633 CDD RIBOc 1025 1183 IPR000999 GO:0004525|GO:0006396
Arst1g03056 1633 SMART riboneu5 1228 1379 IPR000999 GO:0004525|GO:0006396
Arst1g03056 1633 SMART riboneu5 1023 1192 IPR000999 GO:0004525|GO:0006396
Arst1g03056 1633 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 400 554 IPR001650 -
Arst1g03056 1633 ProSiteProfiles Ribonuclease III family domain profile. 990 1172 IPR000999 GO:0004525|GO:0006396
Arst1g03056 1633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 530 IPR027417 -
Arst1g03056 1633 SMART DRBM_3 1549 1623 IPR014720 -
Arst1g03056 1633 SMART DRBM_3 1384 1448 IPR014720 -
Arst1g03056 1633 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 581 671 IPR005034 GO:0016891
Arst1g03056 1633 CDD DSRM_DCL_plant 1555 1624 - -
Arst1g03056 1633 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 233 IPR014001 -
Arst1g03056 1633 ProSitePatterns Ribonuclease III family signature. 1248 1256 IPR000999 GO:0004525|GO:0006396
Arst1g03056 1633 SUPERFAMILY RNase III domain-like 1211 1374 IPR036389 GO:0004525|GO:0006396
Arst1g03056 1633 SUPERFAMILY RNase III domain-like 1021 1186 IPR036389 GO:0004525|GO:0006396
Arst1g03056 1633 Gene3D Dicer dimerisation domain 577 674 IPR038248 -
Arst1g03056 1633 Gene3D Ribonuclease III domain 1018 1183 IPR036389 GO:0004525|GO:0006396
Arst1g03056 1633 ProSiteProfiles PAZ domain profile. 876 976 IPR003100 GO:0005515
Arst1g03056 1633 Pfam Helicase conserved C-terminal domain 397 515 IPR001650 -
Arst1g03056 1633 FunFam Endoribonuclease dicer-like 1 576 672 - -
Arst1g03056 1633 Gene3D Ribonuclease III domain 1211 1383 IPR036389 GO:0004525|GO:0006396
Arst1g03056 1633 SMART PAZ_2_a_3 853 1002 IPR003100 GO:0005515
Arst1g03056 1633 FunFam Endoribonuclease dicer-like protein 45 281 - -
Arst1g03056 1633 ProSiteProfiles Ribonuclease III family domain profile. 1213 1356 IPR000999 GO:0004525|GO:0006396
Arst1g03056 1633 SUPERFAMILY dsRNA-binding domain-like 1338 1448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g03056 Arst-Chr1 92051889 92064718 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g03056 415 552 Eukaryotic Initiation Factors Gene Family AT3G19760 31.915 6.57e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g03056 K11592 - gmx:100818702 2519.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g03056 1 92051889 92064718 Arst1g03056 1 92051889 92064718 ECH