LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst1g03052	ATGGCTTCCGGTGACATCTCTTTCGAGGATCTTAAGAATGAGAATGTGGATCTCGAAAACATTCCCATTGAGGAAGTGTTCGTGCAACTGAAATGTAGCCGAGAGGGTTTGACATCAGCTGAAGGAGAGAAGAGGCTACAAATCTTCGGTTACAACAAACTAGAAGAGAAAAAGGATAGCAAGCTGCTTAAATTCTTGGGTTTCATGTGGAATCCATTGTCATGGGTCATGGAGGCTGCTGCTGTCATGGCCATTGCATTGGCCAATGGCGGGGGCAAGCCACCGGATTGGCAAGATTTCGTTGGTATTGTGGTGTTGCTTTTGATCAACTCAACGATTAGTTTCATTGAGGAAAACAGTGCCGGCAATGCCGCAGCTGCTTTGATGGCCGGTCTTGCACCCAAAACCAAGGTGTTGAGAGATGGAAAATGGAGTGAGGAAGAAGCAGCAATCTTGGTGCCTGGAGATTTGATCAGCATCAAGTTGGGAGATATCGTTCCTGCAGATGCTCGTCTTTTGGAAGGTGATCCTCTCAAGATTGACCAAGCTGCCCTCACCGGCGAGTCATTGCCGGTCACCAAGAACCCCGGTGATGAGGTCTTCTCTGGCTCCACATGCAAACAAGGTGAGATCGAGGCTGTTGTCATTGCCACCGGTGTCCACACCTTCTTTGGCAAGGCTGCTCATCTTGTAGACAGCACCAACAATGTTGGTCACTTCCAACAGGTGTTGACTGCCATTGGTAACTTCTGCATCTGCTCAATTGCTGTGGGAATGCTGATTGAGATCATTGTGGTGTATCCCATCCAACAGAGGGCATACAGAGATGGTATTGATAACTTGTTGGTTCTTCTTATTGGTGGTATTCCAATTGCCATGCCAACTGTCTTGTCTGTCACCATGGCTATTGGCTCTCACCGCCTTTCCGAGCAAGGAGCCATCACCAAGAGGATGACTGCCATTGAAGAAATGGCAGGTATGGATGTTCTCTGCAGTGACAAGACCGGAACTCTCACCCTTAACAAGCTTACCGTTGACAAGGACTTGATTGAGGTCTTCCCCCCTAAGGTCGACAAGCAAACCCTTGTCTTGTTTGCTGCCAGGGCTTCCAGGGTTGAAAACCAGGATGCCATTGATGCTTCAATTGTTGGAATGTTGAGTGATCCCAAGGAGGCAAGAGCAGGAATCACCGAGGTGCATTTCTTGCCCTTCAATCCTGTGGAGAAGCGCACAGCCATTACCTACATTGATAGCAATGGAGACTGGCACAGAAGCAGCAAGGGTGCTCCTGAGCAAGGAGAGACTTTGAAGAAGGCCCATAAGATCATTGATGACTTTGCCAACCGTGGTCTGCGTGCATTGGGCGTTGCACGCCAGACTGTTTCAGCAAAGAGCAAGGAAAGCGAAGGAGAACCATGGGAGTTCTTGGGCTTGTTGCCACTTTTCGACCCTCCAAGGCATGATAGTGCAGAGACTATCCGTCGTGCTCTTGAACTCGGTGTGAATGTTAAGATGATCACCGGTGACCAACTTGCCATCGGAAAAGAAACCGGTCGTAGGCTCGGAATGGGAACCAACATGTACCCTTCATCCTCACTCCTTGGTGCTAGCAAAGACCCTGCCATTGCAGCCATTCCAATTGATGAACTGATTGAGAAGGCTGATGGATTCGCCGGAGTGTTCCCAGAGCACAAATACGAGATCGTGAAGAGACTGCAGGATAAGAAACACATAGTGGGAATGACCGGAGATGGTGTGAACGATGCACCGGCATTGAAGAAGGCAGATATCGGTATCGCAGTGGCAGATGCAACTGATGCCGCAAGAAGTGCCTCAGATATTGTGTTGACTGAGCCTGGATTGAGCGTGATTGTGAGTGCTGTGCTTACAAGCAGGGCTATCTTCCAGAGGATGAAGAACTACACCATCTATGCTGTCTCCATTACCATCCGTATTGTTTTTGGATTCATGCTTGTGGCACTCATCTGGAAGTTCGACTTCTCACCTTTCATGGTGCTCGTCATTGCCATCTTGAACGATGGAACCATCATGACCATCTCCAAGGACAGGGTCAAGCCATCTCCTCTCCCTGACTCATGGAAGCTCAAGGAAATCTTCGCCACCGGCATTGTCCTTGGTTTATACATGGCTGTCACCACTGCCTTGTTCTTCTACTTGATCCATGACACCGACTTCTTCACCAATACCTTCCACGTGGAGGCAATTTATGATAGTGAGGAGCAACTCACCTCAGCTCTATACCTTCAAGTGAGTATCATCAGTCAAGCACTCATCTTCGTGACAAGGTCAAGGGGCTGGTCCTACATTGAACGCCCTGGATTGTTGCTTGTTGTCGCCTTCCTCGCAGCACAACTGGTGGCAACTGTGGTTGCTGTGTACGCACACTGGGACTTCGCTAGAATCAACGGAATCGGGTGGAGATGGGCAGGAGCAATCTGGATCTTCAGCATTGTGACATACATCCCTCTTGATATCCTAAAGTTCTTGATCAGGTTGGGGCTGTCAGGAAGGGCATGGGACAACATGATTGACAAGAAGACCGCATTCACAACAAAGAAGGATTACGGCAAAAGCGAGAGGGAAGCTCAATGGGCTGTGGCTCAGCGCACATTGCACGGACTCCAGGTTCCTGAGACCCAACCCGCATTATCCACTGAGATCTCTGAAATCGCTGAGCAGGCCAGAAGACGTGCTGAGGCTGCAAGGCTAAGAGAACTCCACACTCTCAAGGGCCATGTTGAATCCGTCGTCAAGTTGAAGGGTCTTGACATTGATACCATCCAACAACACTACACGCTTTAA	2823	0.4924	MASGDISFEDLKNENVDLENIPIEEVFVQLKCSREGLTSAEGEKRLQIFGYNKLEEKKDSKLLKFLGFMWNPLSWVMEAAAVMAIALANGGGKPPDWQDFVGIVVLLLINSTISFIEENSAGNAAAALMAGLAPKTKVLRDGKWSEEEAAILVPGDLISIKLGDIVPADARLLEGDPLKIDQAALTGESLPVTKNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQQVLTAIGNFCICSIAVGMLIEIIVVYPIQQRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKDLIEVFPPKVDKQTLVLFAARASRVENQDAIDASIVGMLSDPKEARAGITEVHFLPFNPVEKRTAITYIDSNGDWHRSSKGAPEQGETLKKAHKIIDDFANRGLRALGVARQTVSAKSKESEGEPWEFLGLLPLFDPPRHDSAETIRRALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGASKDPAIAAIPIDELIEKADGFAGVFPEHKYEIVKRLQDKKHIVGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLVALIWKFDFSPFMVLVIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIVLGLYMAVTTALFFYLIHDTDFFTNTFHVEAIYDSEEQLTSALYLQVSIISQALIFVTRSRGWSYIERPGLLLVVAFLAAQLVATVVAVYAHWDFARINGIGWRWAGAIWIFSIVTYIPLDILKFLIRLGLSGRAWDNMIDKKTAFTTKKDYGKSEREAQWAVAQRTLHGLQVPETQPALSTEISEIAEQARRRAEAARLRELHTLKGHVESVVKLKGLDIDTIQQHYTL	940

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Arst1g03052	940	Gene3D	-	343	482	IPR023299	GO:0000166
Arst1g03052	940	Gene3D	-	134	218	-	-
Arst1g03052	940	SMART	Cation_ATPase_N_a_2	17	89	IPR004014	-
Arst1g03052	940	SUPERFAMILY	Calcium ATPase, transmembrane domain M	16	839	IPR023298	-
Arst1g03052	940	FunFam	Plasma membrane ATPase	476	630	-	-
Arst1g03052	940	FunFam	Plasma membrane ATPase	134	218	-	-
Arst1g03052	940	SUPERFAMILY	Calcium ATPase, transduction domain A	134	231	IPR008250	-
Arst1g03052	940	FunFam	ATPase 4 plasma membrane-type	569	809	-	-
Arst1g03052	940	Pfam	haloacid dehalogenase-like hydrolase	327	596	-	-
Arst1g03052	940	Gene3D	-	96	809	-	-
Arst1g03052	940	ProSitePatterns	E1-E2 ATPases phosphorylation site.	333	339	IPR018303	-
Arst1g03052	940	NCBIfam	HAD-IC family P-type ATPase	557	668	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Arst1g03052	940	NCBIfam	HAD-IC family P-type ATPase	103	347	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Arst1g03052	940	Gene3D	-	328	619	IPR023214	-
Arst1g03052	940	PRINTS	P-type cation-transporting ATPase superfamily signature	477	488	-	-
Arst1g03052	940	PRINTS	P-type cation-transporting ATPase superfamily signature	181	195	-	-
Arst1g03052	940	PRINTS	P-type cation-transporting ATPase superfamily signature	499	509	-	-
Arst1g03052	940	PRINTS	P-type cation-transporting ATPase superfamily signature	605	617	-	-
Arst1g03052	940	PRINTS	P-type cation-transporting ATPase superfamily signature	331	345	-	-
Arst1g03052	940	PRINTS	P-type cation-transporting ATPase superfamily signature	582	601	-	-
Arst1g03052	940	FunFam	Plasma membrane ATPase	343	482	-	-
Arst1g03052	940	SUPERFAMILY	HAD-like	327	629	IPR036412	-
Arst1g03052	940	SFLD	p-type atpase	313	634	IPR044492	-
Arst1g03052	940	SFLD	p-type atpase	313	634	IPR044492	-
Arst1g03052	940	PRINTS	H+-transporting ATPase (proton pump) signature	754	775	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Arst1g03052	940	PRINTS	H+-transporting ATPase (proton pump) signature	554	570	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Arst1g03052	940	PRINTS	H+-transporting ATPase (proton pump) signature	582	598	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Arst1g03052	940	PRINTS	H+-transporting ATPase (proton pump) signature	613	638	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Arst1g03052	940	PRINTS	H+-transporting ATPase (proton pump) signature	439	457	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Arst1g03052	940	PANTHER	CALCIUM-TRANSPORTING ATPASE	19	877	-	-
Arst1g03052	940	PANTHER	CALCIUM-TRANSPORTING ATPASE	19	877	-	-
Arst1g03052	940	Gene3D	-	891	940	-	-
Arst1g03052	940	Pfam	Cation transporter/ATPase, N-terminus	20	83	IPR004014	-
Arst1g03052	940	NCBIfam	plasma-membrane proton-efflux P-type ATPase	36	800	IPR006534	GO:0008553\|GO:0016020\|GO:0120029
Arst1g03052	940	SFLD	Haloacid Dehalogenase	313	634	-	-
Arst1g03052	940	NCBIfam	plasma-membrane proton-efflux P-type ATPase	36	800	IPR006534	GO:0008553\|GO:0016020\|GO:0120029
Arst1g03052	940	SFLD	Haloacid Dehalogenase	313	634	-	-
Arst1g03052	940	Pfam	E1-E2 ATPase	133	310	-	-
Arst1g03052	940	CDD	P-type_ATPase_H	36	835	IPR006534	GO:0008553\|GO:0016020\|GO:0120029

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst1g03052	Arst-Chr1	92022636	92026302	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst1g03052	5	940	Primary Pumps ATPases	AT3G42640	83.069	0.0	1607

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst1g03052	K01535		-	gmx:100798717	1599.33