LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst1g03000	ATGTTTGACGCTGGTTACAAGTCACAATACATGGGTAGCCAGCAGGACAAACTTTACAGGTTGGAAGTCTTTGATTCTAGACTATCTTCGTCTACTGATGCTGGAGTTAAAAAATCTGGATTTAGTATTGATAAATTAAGCAATAGTGGTCATGGAAGCTGCACAACCTCTAGGTCCTTTAAAAGAGGAATGAGAAAGGGATCTGAAGGGCTGAAATCAATTGGCCGATCACTTGGATTTGGGGTATCTAAGGCAGTGTTTCCAGAAGATCTTAAAGTGTCTGAAAAGAAGATATTTGATCCTCAAGACAAATTTTTGCTCTTATGGAATAAACTTTCTGTTATCTCATGCATTTTGGCTGTGTCTGTGGATCCGCTGTTCTTTTATCTTCCTGTCATTGATGATCAAGCACACTGTGTTGGCATAGACCGAAAGTTGGCAGTTATAGCTACAACCTTAAGGACAGTCATTGATGCTTTCTATCTTATACACATGGCGCTCCAATTTCGTACTGCATATATTGCTCCATCATCTCGTGTCTTTGGACGGGGTGAGCTGGTCATAGATCCGGCACAGATAGCCAAGCGTTACTTGCAGCGATATTTCATCATTGATTTCCTATCTGTATTTCCCTTACCACAGATTGTGGTTTGGAGATTTCTTCTGAGGTCAAATGGTTCAGATGTACTTCCAACAAAGCAGGCCTTGCTGTATATTGTCTTGTTTCAGTATGTTCCCAGATTTTTCCGAATGGTTCCATTGACTTCAGAACTTAAAAGAACAGCTGGTGTATTTGCTGAAACCGCGTGGGCTGGTGCTGCATATTACTTGCTGCTATATATGCTTGCCAGTCATATAGTTGGAGCATTTTGGTACTTGTTAGCAATTGAACGCAACGACTTTTGCTGGCAGAAGGCTTGCCGCAATGATTGCAACAAAAACTTCCTGTATTGTGGCAACCAAAACATGGTAGGTTATGCTGCCTGGAAGAATATAAGTGACAGTACTCTTAAGTTAAAATGTGCTGCAGATGGGGACAATCCACCTTTTGATTATGGAATTTTTAACCAAGCTTTGACATCTGATATTGTTTCATCATCTAAGAATTTCTTCTCCAAATACTGTTACTGTTTATGGTGGGGGCTGCAGAATCTGAGTACACTTGGTCAGGGGCTTCAAACTAGCACCTATCCTGGTGAGGTTATATTTTCTATAGCACTAGCTATTGCTGGACTCATTCTCTTTGCACTTCTGATTGGCAACATGCAGACATATCTTCAGTCTCTTACCATTAGGCTTGAGGAAATGAGAGTGAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCACAAGATCTTAGAGAGCGTGTGAGACGTTATGATCAATATAAGTGGTTGGCAACACGTGGTGTAGATGAAGAAAACTTGGTTCAGAGTCTACCAAAGGATCTGCGAAGAGATATTAAGCGACATCTTTGTCTAGCTTTAGTGAGGAGGGTTCCTCTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAACCATGTTTATTTACAGAGAATACATACATTGTCCGCGAAGGAGATCCAGTTGATGAGATGCTTTTCATTATACGAGGTCGCCTTGAGAGTGTCACCACAGATGGTGGGAGAAGTGGATTTTTCAACCGTGGTTTTCTAAAAGAGGCTGACTTCTGTGGTGAGGAACTCTTGACCTGGGCACTGGATCCCAGATCTGGCTCTAATCTCCCATCTTCTACTAGAACAGTTAAGGCATTGACTGAGGTAGAAGCTTTTGCCTTAACTGCTGATGAGTTAAAGTTTGTAGCCAGTCAGTTTAGGCGCCTTCACAGTAGACAGGTGCAGCACACTTTCCGTTTTTACTCCCAACAATGGAGGACTTGGGCTGCGTGCTTTATTCAAGCAGCGTGGCGCCGATATTCTAAAAAGAAACTTATGAAGCTTCGCCAGAAGGAAGAAGATCCCGATGAGTCAGAAGGAACTCAAAACAATGCTGGTGGCACTTCATACAGCCTCGGTGCTGCCTTGTTAGCCTCAAAATTTGCTGCGCACACTCTTCGAGGCGTACAACGCAATCGAAATGCCAGGACTGCCAGGGAGTTGGTGAAACTACAGAAACCACCAGAACCTGATTTTACAGCAGATGATGCAGACTAA	2202	0.4273	MFDAGYKSQYMGSQQDKLYRLEVFDSRLSSSTDAGVKKSGFSIDKLSNSGHGSCTTSRSFKRGMRKGSEGLKSIGRSLGFGVSKAVFPEDLKVSEKKIFDPQDKFLLLWNKLSVISCILAVSVDPLFFYLPVIDDQAHCVGIDRKLAVIATTLRTVIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLQRYFIIDFLSVFPLPQIVVWRFLLRSNGSDVLPTKQALLYIVLFQYVPRFFRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAIERNDFCWQKACRNDCNKNFLYCGNQNMVGYAAWKNISDSTLKLKCAADGDNPPFDYGIFNQALTSDIVSSSKNFFSKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAIAGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLATRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPRSGSNLPSSTRTVKALTEVEAFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKKKLMKLRQKEEDPDESEGTQNNAGGTSYSLGAALLASKFAAHTLRGVQRNRNARTARELVKLQKPPEPDFTADDAD	733

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst1g03000	733	Gene3D	Helix hairpin bin	433	496	-	-
	Arst1g03000	733	MobiDBLite	consensus disorder prediction	703	733	-	-
	Arst1g03000	733	Gene3D	-	114	430	-	-
	Arst1g03000	733	ProSiteProfiles	IQ motif profile.	641	670	IPR000048	GO:0005515
	Arst1g03000	733	FunFam	Cyclic nucleotide-gated ion channel 1	503	621	-	-
	Arst1g03000	733	FunFam	Cyclic nucleotide-gated ion channel 1	432	496	-	-
	Arst1g03000	733	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	90	727	-	-
	Arst1g03000	733	SMART	cnmp_10	505	636	IPR000595	-
	Arst1g03000	733	MobiDBLite	consensus disorder prediction	708	733	-	-
	Arst1g03000	733	Gene3D	Jelly Rolls	503	623	IPR014710	-
	Arst1g03000	733	SUPERFAMILY	cAMP-binding domain-like	434	625	IPR018490	-
	Arst1g03000	733	SUPERFAMILY	Voltage-gated potassium channels	100	427	-	-
	Arst1g03000	733	ProSiteProfiles	cAMP/cGMP binding motif profile.	505	589	IPR000595	-
	Arst1g03000	733	CDD	CAP_ED	505	636	IPR000595	-
	Arst1g03000	733	Pfam	Cyclic nucleotide-binding domain	526	616	IPR000595	-
	Arst1g03000	733	Pfam	Ion transport protein	108	431	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst1g03000	Arst-Chr1	91638188	91644707	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst1g03000	1	731	Ion Channels	AT2G23980	75.636	0.0	1145

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst1g03000	K05391		-	gmx:100784309	1253.81