Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g02995 ATGGCTTCCTCTAGTTTCCAAGTGACCTGTTTCTACAAGATTGTTCTCAGACAAAGCCTTGAAGATGGAAATCTTACGATACCAAAAACGTTCGGTATGAAATATGGTGACGGTGTTCCAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTGCTTGGAAGATAGATTGGTCTGAGTATGATGGTGCCATTCTATTTGAAAATGGTTGGAAAGAATTTGCTTCATATTACTCTTTGGATCATGGCCATATGCTGTGGTTTGAGTACAATGAAACTTCTAACATTGAAGTAAACATTTTTGACATGACTTGCCTTGAAATAGACTATCCTTCCTTGGATCACATCAGCGATGACGATTCGATTGAGATCTTGAATGAACTGCCCCCACGAGGCAACTATCCTTCCAAGGATCACATTGATGATGGCAACAAGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGCCGAGGCCGGCCGAGGAAAACAGAGAAAGCAGCACCAAAGACACCATCTCCTTGTACAAGCAAAATGTTCACAAGTTCTGCCAAAACTAAAGAAGTGAAATGGCGCGCTGAAATACAATATCCTTCCAAGCACCACATTGATGAGGACAACATGGCTAAGCCACGAAGAGGCCGAGGCCGGCCGAGGAAATCAGAGAAAGCAGCATCTGCTTGTAGAAGCAAAATGTTCACAAGTTCTGCCAAAACTAGAGCAGTGAAATGGTGCCCTGAAATAGACTATGCTTCCAAGGACAACATGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGGCGAGGCCGGCCGAGAAAAACAGAGAAAGCAGCACCAAAGACACCATCTGGCAAAACTAGGTGCCCTGAAATAGACTATCCTTCCAAGGACAACATGGTTAAGGTTGAGAATGAACCGCCAAGAAGAGGCCGAGGCCGGCGGAGGAAAAAATTGAAAGCAGCAGCAGAAGTATCATCTCCTTCTACAAGTAAAATATTGAGTAGTTCTGTCAAAACTGGAGATGTAGAGAACTGGATGCTGTGTTGCAAGAATGAAGAAGCTAGTCAATCTGAATGA 1071 0.4435 MASSSFQVTCFYKIVLRQSLEDGNLTIPKTFGMKYGDGVPNPVYLKPPDGTAWKIDWSEYDGAILFENGWKEFASYYSLDHGHMLWFEYNETSNIEVNIFDMTCLEIDYPSLDHISDDDSIEILNELPPRGNYPSKDHIDDGNKVKVENEPPRRGRGRPRKTEKAAPKTPSPCTSKMFTSSAKTKEVKWRAEIQYPSKHHIDEDNMAKPRRGRGRPRKSEKAASACRSKMFTSSAKTRAVKWCPEIDYASKDNMVKVENEPPRRGRGRPRKTEKAAPKTPSGKTRCPEIDYPSKDNMVKVENEPPRRGRGRRRKKLKAAAEVSSPSTSKILSSSVKTGDVENWMLCCKNEEASQSE 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g02995 356 MobiDBLite consensus disorder prediction 250 335 - -
Arst1g02995 356 MobiDBLite consensus disorder prediction 183 210 - -
Arst1g02995 356 MobiDBLite consensus disorder prediction 251 278 - -
Arst1g02995 356 MobiDBLite consensus disorder prediction 125 234 - -
Arst1g02995 356 SMART AT_hook_2 153 165 IPR017956 GO:0003677
Arst1g02995 356 SMART AT_hook_2 263 275 IPR017956 GO:0003677
Arst1g02995 356 SMART AT_hook_2 210 222 IPR017956 GO:0003677
Arst1g02995 356 SUPERFAMILY DNA-binding pseudobarrel domain 4 102 IPR015300 -
Arst1g02995 356 PRINTS High mobility group protein (HMGY) signature 208 220 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Arst1g02995 356 PRINTS High mobility group protein (HMGY) signature 252 271 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Arst1g02995 356 PRINTS AT-hook-like domain signature 208 219 IPR017956 GO:0003677
Arst1g02995 356 PRINTS AT-hook-like domain signature 261 271 IPR017956 GO:0003677
Arst1g02995 356 PRINTS AT-hook-like domain signature 153 163 IPR017956 GO:0003677
Arst1g02995 356 MobiDBLite consensus disorder prediction 321 335 - -
Arst1g02995 356 PANTHER B3 DOMAIN-CONTAINING 6 258 - -
Arst1g02995 356 Pfam B3 DNA binding domain 18 101 IPR003340 GO:0003677
Arst1g02995 356 MobiDBLite consensus disorder prediction 168 182 - -
Arst1g02995 356 CDD B3_DNA 10 101 IPR003340 GO:0003677
Arst1g02995 356 SMART B3_2 11 103 IPR003340 GO:0003677
Arst1g02995 356 Gene3D - 4 104 IPR015300 -
Arst1g02995 356 MobiDBLite consensus disorder prediction 288 307 - -
Arst1g02995 356 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Arst1g02995 356 MobiDBLite consensus disorder prediction 133 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g02995 Arst-Chr1 91613054 91614833 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g02995 8 123 B3 DNA Binding Superfamily AT4G01580 39.167 6.04e-17 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Arst1g02995 B3 1.4e-09 CL0405