LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst1g02981	ATGGAAGCCAGCGCCGGACTTGTCGCTGGCTCTCATAACCGCAATGAGCTTGTTGTCATTCATGGCCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGTCAAGTGTGTGAGATATGTGGTGATGAGGTGGGACTCACGGCGGATGGAGACTTGTTTGTGGCCTGCAATGAGTGTGGTTTTCCGGTGTGCCGGCCGTGCTATGAGTATGAAAGGAGGGAAGGCAGCCAACTTTGTCCACAATGCAAAACCAGATACAAGCGTCTCAAGGGGAGTCCAAGGGTGGAGGGAGATGAAGATGAGGAGGATGTGGATGATATTGAACATGAATTTAACATCGAGGATGAAAGGAACAAGCATGACCATTCTGCAGAAGCCATGCTGTATGGGAAGATGAGCTATGGAAGAGGTCCTGAAGATGAAGATAATGCTCAATTCCCAGCTGTCATTTCTGGTGGTCGATCTCTTCCTGTGAGTGGAGAGTTATCAGCAGTGGGATCTCATGCTTATGGAGAGATGTTATCTTCTACATTGCATAAAAGAGTGCATCCATATCCAGTTTCTGAACCTGGAAGTGAAAGATGGGATGATAAGAAAGATGGATGGAAAGAAAGGATGGATGATTGGAAACTTCAACAAGGCAATTTAGGCCCTGAACCTGATGAAGATTTTGATGCAGCCATGTTGGATGTAACAAGGCAACCACTATCAAGGAAGGTACCAATTGCATCTAGCAAAGTGAATCCATATAGGATGGTGATTGTGGCGCGGCTTGTTATTCTTGCGTTCTTTCTAAGATATCGAATTCTGAACCCGGTTCATGATGCACTGGGGCTATGGCTAACTTCCATTATATGTGAAATCTGGTTTGCTTTTTCATGGATCCTTGATCAGTTCCCTAAATGGTTCCCAATTGATAGAGAGACCTACCTTGACCGTCTTTCAATCAGGTATGAGCGTGAAGGTGAACCAAACATGCTTGCTCCTGTGGATGTGTTTGTGAGTACTGTGGACCCTATGAAGGAACCTCCTCTTGTTACAGCAAACACTGTTCTTTCAATCTTGGCCATGGATTACCCTGTTGACAAGATATCTTGCTACATTTCTGATGATGGTGCTTCAATGTGTACATTTGAAGCCTTATCAGAAACTGCAGAGTTTGCTAGGAAGTGGGTACCATTTTGCAAGAAATTTTCCATAGAACCAAGGGCACCGGAGATGTACTTCTCTGAGAAAATTGACTACCTCAAGGACAAAGTGCAACCAACCTTTGTTAAGGAGCGGCGCGCAATGAAGAGAGAATATGAAGAGTTTAAGGTGAGGATCAATGCACTTGTGGCTAAAGCACAGAAGGTTCCTCCAGGAGGGTGGATCATGCAGGATGGGACACCATGGCCAGGAAACAATACTAAGGATCATCCTGGTATGATTCAAGTATTTCTTGGCCACAGTGGAGGCCATGACACTGAAGGAAATGAGCTCCCTCGTCTCGTCTATGTCTCCAGGGAGAAAAGGCCTGGTTTTCAGCACCACAAGAAAGCTGGTGCCATGAATGCTCTGATTCGGGTCTCTGCTGTGCTTACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCACTATGTCAATAACAGCAAAGCTGTCCGAGAGGCCATGTGCTTTTTAATGGACCCTCAAACTGGGAAGAAAGTCTGCTATGTCCAATTTCCTCAGAGATTTGATGGTATCGATACACATGATCGGTATGCTAACAGGAACACAGTTTTCTTTGATATTAACATGAAGGGATTGGATGGAATTCAGGGTCCTGTATATGTGGGCACAGGTTGTGTATTCAGGAGGCAAGCTTTATATGGATACAATCCTCCAAAAGGTCCTAAACGTCCAAAAATGGTAAGTTGTGACTGTTGTCCATGCTTCGGAAAGCGTAAGAAGGCAAAGCATGCAAAGAATGATGCAATTGCAGAGGCTGCAAACCTTAAAGCAATGGAGGATGACAAAGAGTTGCTCATGTCCCAAATGAATTTTGAGAAGAAATTTGGGCAGTCATCTATTTTTGTGACTTCAACTTTGATGGAAGAGGGTGGTGTACCTCCTTCATCAAGTCCAGCAAGCCAGCTTAAAGAAGCCATTCATGTAATCAGTTGTGGTTATGAAGATAAAACTGAATGGGGAATTGAGCTAGGTTGGATCTATGGTTCTATTACAGAGGATATTCTAACAGGTTTCAAGATGCATTGCCGTGGTTGGAGATCCATTTACTGCATGCCAAAGAGAACAGCATTCAAGGGTACTGCTCCCATCAACTTGTCAGATAGGCTTAACCAGGTGCTTCGTTGGGCACTTGGATCCATCGAGATCTTCTTCAGTCGCCATTGCCCGTTATGGTATGGCTACAAGGAAGGGAAGCTAAAGTGGCTTGAGAGATTTGCATATGCAAACACAACTGTCTACCCATTCACATCCATACCTCTGGTTGCATACTGTATTCTTCCTGCTGTCTGCTTACTCACTGACAAATTCATCATGCCGCCGATAAGCACTTTTGCTGGTTTGTACTTTGTTGCTCTCTTCTCTTCAATCATTGCAACTGGCATTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAAGAATGGTGGAGAAATGAACAATTCTGGGTCATTGGTGGTGTATCAGCACATCTCTTTGCTGTCATACAAGGTCTTCTGAAGGTGTTGGCTGGAATTGACACCAACTTCACTGTCACATCCAAGGCTGCAGACGATGAAGAGTTTGGAGAGTTATACACCTTCAAGTGGACTACTCTCTTGATTCCTCCAACTACAATCTTAATAATCAACATTGTTGGGGTTGTTGCTGGAATCTCAGATGCAATAAACAATGGTTACCAATCATGGGGACCTCTCTTTGGAAAACTCTTCTTCTCCTTCTGGGTGATTGTCCATCTATATCCATTCCTTAAAGGTTTGATGGGTCGGCAAAACCGCACACCTACCATAGTTGTGATATGGTCAGTGCTATTGGCTTCCATCTTCTCGTTGCTCTGGGTAAGAATTGATCCATTTGTGACGAAAACTAAAGGACCTGATACCAAGATGTGTGGAATAAACTGCTGA	3117	0.4421	MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDEVGLTADGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDEDEEDVDDIEHEFNIEDERNKHDHSAEAMLYGKMSYGRGPEDEDNAQFPAVISGGRSLPVSGELSAVGSHAYGEMLSSTLHKRVHPYPVSEPGSERWDDKKDGWKERMDDWKLQQGNLGPEPDEDFDAAMLDVTRQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPPGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGKRKKAKHAKNDAIAEAANLKAMEDDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRTAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGYKEGKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVTKTKGPDTKMCGINC	1038

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst1g02981	1038	Pfam	Cellulose synthase	330	1032	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Arst1g02981	1038	Pfam	Cellulose synthase	330	1032	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Arst1g02981	1038	ProSiteProfiles	Zinc finger RING-type profile.	37	83	IPR001841	-
	Arst1g02981	1038	CDD	mRING-HC-C4C4_CesA	35	85	-	-
	Arst1g02981	1038	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	233	1005	-	-
	Arst1g02981	1038	Pfam	Zinc-binding RING-finger	27	104	IPR027934	-
	Arst1g02981	1038	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	233	1005	-	-
	Arst1g02981	1038	FunFam	Cellulose synthase	19	110	-	-
	Arst1g02981	1038	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	20	109	IPR013083	-
	Arst1g02981	1038	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	476	621	IPR029044	-
	Arst1g02981	1038	FunFam	Cellulose synthase	447	621	-	-
	Arst1g02981	1038	SUPERFAMILY	RING/U-box	21	107	-	-
	Arst1g02981	1038	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	343	805	IPR029044	-
	Arst1g02981	1038	Coils	Coil	643	663	-	-
	Arst1g02981	1038	Coils	Coil	428	448	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst1g02981	Arst-Chr1	91519463	91524535	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst1g02981	1	1038	Cell Wall Biosynthesis	AT5G17420	86.044	0.0	1844

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst1g02981	K10999		-	gmx:100815436	2002.25