Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g02980 ATGGAAGCCAGCGCCGGACTTGTCGCTGGCTCTCATAACCGCAATGAGCTTGTTGTCATTCATGGCCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGTCAAGTGTGTGAGATATGTGGTGATGAGGTGGGACTCACGGCGGATGGAGACTTGTTTGTGGCCTGCAATGAGTGTGGTTTTCCGGTGTGCCGGCCGTGCTATGAGTATGAAAGGAGGGAAGGCAGCCAACTTTGTCCACAATGCAAAACCAGATACAAGCGTCTCAAGGGGAGTCCAAGGGTGGAGGGAGATGAAGATGAGGAGGATGTGGATGATATTGAACATGAATTTAACATCGAGGATGAAAGGAACAAGCATGACCATTCTGCAGAAGCCATGCTGTATGGGAAGATGAGCTATGGAAGAGGTCCTGAAGATGAAGATAATGCTCAATTCCCAGCTGTCATTTCTGGTGGTCGATCTCTTCCTGTGAGTGGAGAGTTATCAGCAGTGGGATCTCATGCTTATGGAGAGATGTTATCTTCTACATTGCATAAAAGAGTGCATCCATATCCAGTTTCTGAACCTGGAAGTGAAAGATGGGATGATAAGAAAGATGGATGGAAAGAAAGGATGGATGATTGGAAACTTCAACAAGGCAATTTAGGCCCTGAACCTGATGAAGATTTTGATGCAGCCATGTTGGATGTAACAAGGCAACCACTATCAAGGAAGGTACCAATTGCATCTAGCAAAGTGAATCCATATAGGATGGTGATTGTGGCGCGGCTTGTTATTCTTGCGTTCTTTCTAAGATATCGAATTCTGAACCCGGTTCATGATGCACTGGGGCTATGGCTAACTTCCATTATATGTGAAATCTGGTTTGCTTTTTCATGGATCCTTGATCAGTTCCCTAAATGGTTCCCAATTGATAGAGAGACCTACCTTGACCGTCTTTCAATCAGGTATGAGCGTGAAGGTGAACCAAACATGCTTGCTCCTGTGGATGTGTTTGTGAGTACTGTGGACCCTATGAAGGAACCTCCTCTTGTTACAGCAAACACTGTTCTTTCAATCTTGGCCATGGATTACCCTGTTGACAAGATATCTTGCTACATTTCTGATGATGGTGCTTCAATGTGTACATTTGAAGCCTTATCAGAAACTGCAGAGTTTGCTAGGAAGTGGGTACCATTTTGCAAGAAATTTTCCATAGAACCAAGGGCACCGGAGATGTACTTCTCTGAGAAAATTGACTACCTCAAGGACAAAGTGCAACCAACCTTTGTTAAGGAGCGGCGCGCAATGAAGAGAGAATATGAAGAGTTTAAGGTGAGGATCAATGCACTTGTGGCTAAAGCACAGAAGGTTCCTCCAGGAGGGTGGATCATGCAGGATGGGACACCATGGCCAGGAAACAATACTAAGGATCATCCTGGTATGATTCAAGTATTTCTTGGCCACAGTGGAGGCCATGACACTGAAGGAAATGAGCTCCCTCGTCTCGTCTATGTCTCCAGGGAGAAAAGGCCTGGTTTTCAGCACCACAAGAAAGCTGGTGCCATGAATGCTCTGATTCGGGTCTCTGCTGTGCTTACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCACTATGTCAATAACAGCAAAGCTGTCCGAGAGGCCATGTGCTTTTTAATGGACCCTCAAACTGGGAAGAAAGTCTGCTATGTCCAATTTCCTCAGAGATTTGATGGTATCGATACACATGATCGGTATGCTAACAGGAACACAGTTTTCTTTGATATTAACATGAAGGGATTGGATGGAATTCAGGGTCCTGTATATGTGGGCACAGGTTGTGTATTCAGGAGGCAAGCTTTATATGGATACAATCCTCCAAAAGGTCCTAAACGTCCAAAAATGGTAAGTTGTGACTGTTGTCCATGCTTCGGAAAGCGTAAGAAGGCAAAGCATGCAAAGAATGATGCAATTGCAGAGGCTGCAAACCTTAAAGGTTCTCATTTTTCTCTATTCATTAGTCACTACTATTTGAAACTAATTTATATCCAAATTGGTTTCCCTTTACCTATTCTAACCCCTGTCACATGTCTCTATATAGCAATGGAGGATGACAAAGAGTTGCTCATGTCCCAAATGAATTTTGAGAAGAAATTTGGGCAGTCATCTATTTTTGTGACTTCAACTTTGATGGAAGAGGGTGGTGTACCTCCTTCATCAAGTCCAGCAAGCCAGCTTAAAGAAGCCATTCATGTAATCAGTTGTGGTTATGAAGATAAAACTGAATGGGGAATTGAGCTAGGTTGGATCTATGGTTCTATTACAGAGGATATTCTAACAGGTTTCAAGATGCATTGCCGTGGTTGGAGATCCATTTACTGCATGCCAAAGAGAACAGCATTCAAGGGTACTGCTCCCATCAACTTGTCAGATAGGCTTAACCAGGTGCTTCGTTGGGCACTTGGATCCATCGAGATCTTCTTCAGTCGCCATTGCCCGTTATGGTATGGCTACAAGGAAGGGAAGCTAAAGTGGCTTGAGAGATTTGCATATGCAAACACAACTGTCTACCCATTCACATCCATACCTCTGGTTGCATACTGTATTCTTCCTGCTGTCTGCTTACTCACTGACAAATTCATCATGCCGCCGATAAGCACTTTTGCTGGTTTGTACTTTGTTGCTCTCTTCTCTTCAATCATTGCAACTGGCATTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAAGAATGGTGGAGAAATGAACAATTCTGGGTCATTGGTGGTGTATCAGCACATCTCTTTGCTGTCATACAAGGTCTTCTGAAGGTGTTGGCTGGAATTGACACCAACTTCACTGTCACATCCAAGGCTGCAGACGATGAAGAGTTTGGAGAGTTATACACCTTCAAGTGGACTACTCTCTTGATTCCTCCAACTACAATCTTAATAATCAACATTGTTGGGGTTGTTGCTGGAATCTCAGATGCAATAAACAATGGTTACCAATCATGGGGACCTCTCTTTGGAAAACTCTTCTTCTCCTTCTGGGTGATTGTCCATCTATATCCATTCCTTAAAGGTTTGATGGGTCGGCAAAACCGCACACCTACCATAGTTGTGATATGGTCAGTGCTATTGGCTTCCATCTTCTCGTTGCTCTGGGTAAGAATTGATCCATTTGTGACGAAAACTAAAGGACCTGATACCAAGATGTGTGGAATAAACTGCTGA 3222 0.4379 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDEVGLTADGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDEDEEDVDDIEHEFNIEDERNKHDHSAEAMLYGKMSYGRGPEDEDNAQFPAVISGGRSLPVSGELSAVGSHAYGEMLSSTLHKRVHPYPVSEPGSERWDDKKDGWKERMDDWKLQQGNLGPEPDEDFDAAMLDVTRQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPPGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGKRKKAKHAKNDAIAEAANLKGSHFSLFISHYYLKLIYIQIGFPLPILTPVTCLYIAMEDDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRTAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGYKEGKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVTKTKGPDTKMCGINC 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g02980 1073 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Arst1g02980 1073 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Arst1g02980 1073 CDD mRING-HC-C4C4_CesA 35 85 - -
Arst1g02980 1073 FunFam Cellulose synthase 447 621 - -
Arst1g02980 1073 SUPERFAMILY Nucleotide-diphospho-sugar transferases 343 840 IPR029044 -
Arst1g02980 1073 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Arst1g02980 1073 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 476 621 IPR029044 -
Arst1g02980 1073 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 233 1040 - -
Arst1g02980 1073 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 233 1040 - -
Arst1g02980 1073 Pfam Cellulose synthase 330 1067 IPR005150 GO:0016020|GO:0016760|GO:0030244
Arst1g02980 1073 SUPERFAMILY RING/U-box 21 107 - -
Arst1g02980 1073 Pfam Cellulose synthase 330 1067 IPR005150 GO:0016020|GO:0016760|GO:0030244
Arst1g02980 1073 FunFam Cellulose synthase 19 110 - -
Arst1g02980 1073 Coils Coil 428 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g02980 Arst-Chr1 91519463 91524536 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g02980 1 1073 Cell Wall Biosynthesis AT5G17420 83.333 0.0 1828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g02980 K10999 - smo:SELMODRAFT_141535 1616.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g02980 1 91519463 91524536 Arst1g02980 1 91519463 91524536 ECH
Arst1g02980 1 91519463 91524536 Arst10g03597 10 103737609 103752655 PCT
Arst3g03341 3 76615745 76623551 Arst1g02980 1 91519463 91524536 PCT