Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g02952 ATGGCGGTGGTTCTCCTTCTCGTCCTTTTCCTCTCGCGTGCCGCACTCTCTTCATCTGCGGAGCCTCGCAACCACGAAGTGGAGGCTCTAATGAGCATCAAGTGGAGTCTCACTGATCCTCACGGTGTGTTGAGTAACTGGGATGAGTACTCAGTCGACGCTTGCAGCTGGGCCATGATTACTTGCTCCTCTGATTCCCTTGTTATTGGCCTGGGAGCGCCGAGCCAATCTCTCTCTGGAACTTTGTCTGCAGCAATTGGAAACCTAACAAATCTTCGCCAAGTGTTACTGCAGAACAACAATATCTCAGGTCGAATTCCGCCCGAGCTTGGAACCCTTCCAAAGCTTCAGACATTGGATCTTTCCAATAATCGATTCTCTGGGGTGATTCCTTCCTCTCTCGGCCAATTGGATAGTCTCCAATACCTGAGGCTCAACAACAATAGCTTGTCAGGACCCTTTCCTGTTTCACTGGCCAAAATCCCACAGCTTGCTTTCTTAGACTTGTCTTATAACAATCTAAGTGGACCATTGCCCAAGTTTCCTGCAAGGGCATTCAATATTGTGGGAAACCCATTAATTTGTGGAAGCATCACTACTGAAGGTTGCTCTGGATCAGCAACTCTTATGCCCGTTTCCTTCTCTCAAACATCATCACAAGGAAAACACAAGTCCAGAAAAATAGCAGTTGCACTTGGAGTTAGTCTTAGTTGTGCTTCTCTCATGGTTTTGCTCTTTGGGATCTTTTGGTATAGACATAAACGACAGCACCAGGCCATCCTATTTATTGGTGAATATAAGGAAGAGGGAATTGTCAGCTTGGGAAATCTCAAGACTTTCACGTTCAGAGAGCTCCAACAAGCAACAGATAGTTTCAGCTCCAAGAACATACTTGGGGCTGGAGGTTTTGGCAATGTTTATAGGGGAAAACTTGGTGACGGCTCTATGGTGGCAGTGAAAAGACTGAAGGATGTTACTGGAAGTTCTGGTGAATCACAGTTTCGAACAGAATTGGAGATGATCAGTTTGGCAGTTCATCGCAATTTACTTCGCTTAATTGGATATTGTGCTACTCCTAATGAAAAGCTTCTGGTTTATCCTTATATGTCTAATGGCAGTGTGGCATCCAGGCTTAGAGGCAAACCATCTTTAGATTGGAACACAAGAAAGAGGATAGCAATTGGAGCTGCGAGAGGACTTCTGTATCTGCACGAGCAATGCGATCCAAAGATAATACACAGAGATGTTAAAGCTGCTAATGTTCTTCTTGATGACTACTGTGAGGCTGTTGTTGGTGATTTTGGCCTTGCAAAGCTCCTTGACCATTCTGAATCCCACGTCACAACCGCGGTCCGTGGCACTGTTGGGCACATTGCTCCAGAGTACCTTTCCACTGGCCAATCTTCTGAGAAAACTGATGTATTTGGTTTTGGCATTCTCTTGCTAGAGCTCATAACTGGAATGACAGCACTTGAGTTTGGGAAAACTGTGAATCAAAAAGGCGCTATGCTAGAGTGGGTTAGGAAAATACAGCAAGAAAAGAAGGTTTCGGTGTTGGTGGACAAGGAGCTAGGGAGCAACTATGACATGATAGAGGTGGGGGAGATGCTTCAAGTGGCTTTACTATGCACTCAATATTTGCCAGCACATCGCCCCAAGATGTCCGAGGTGGTCCGAATGCTTGAAGGCGATGGACTTGCTGAGAAGTGGGCAGCATCACATAGTAATAATCATGATCGGAATGTTAGTCATGGCATGACCCCAAGCAATAACAGTGGCCACACATCATCCCGCGCCCCTGCCCCTGCATCGAAGCATGATGACAGTGTTCATGATCGTACAAGCATGTTTGGCACCACAATGGATGACGATGATGATGAACGCTCCTTGGATTCCTATGCCATGGAACTCTCTGGTCCTAGGTAA 1926 0.4621 MAVVLLLVLFLSRAALSSSAEPRNHEVEALMSIKWSLTDPHGVLSNWDEYSVDACSWAMITCSSDSLVIGLGAPSQSLSGTLSAAIGNLTNLRQVLLQNNNISGRIPPELGTLPKLQTLDLSNNRFSGVIPSSLGQLDSLQYLRLNNNSLSGPFPVSLAKIPQLAFLDLSYNNLSGPLPKFPARAFNIVGNPLICGSITTEGCSGSATLMPVSFSQTSSQGKHKSRKIAVALGVSLSCASLMVLLFGIFWYRHKRQHQAILFIGEYKEEGIVSLGNLKTFTFRELQQATDSFSSKNILGAGGFGNVYRGKLGDGSMVAVKRLKDVTGSSGESQFRTELEMISLAVHRNLLRLIGYCATPNEKLLVYPYMSNGSVASRLRGKPSLDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHSESHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVRKIQQEKKVSVLVDKELGSNYDMIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLAEKWAASHSNNHDRNVSHGMTPSNNSGHTSSRAPAPASKHDDSVHDRTSMFGTTMDDDDDERSLDSYAMELSGPR 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g02952 641 SMART LRR_typ_2 113 136 IPR003591 -
Arst1g02952 641 SMART LRR_typ_2 89 111 IPR003591 -
Arst1g02952 641 SMART LRR_typ_2 137 168 IPR003591 -
Arst1g02952 641 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 3 572 - -
Arst1g02952 641 MobiDBLite consensus disorder prediction 575 641 - -
Arst1g02952 641 Pfam Protein kinase domain 293 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst1g02952 641 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Arst1g02952 641 ProSiteProfiles Protein kinase domain profile. 292 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst1g02952 641 MobiDBLite consensus disorder prediction 604 623 - -
Arst1g02952 641 FunFam Somatic embryogenesis receptor kinase 1 262 368 - -
Arst1g02952 641 FunFam Somatic embryogenesis receptor-like kinase 1 369 581 - -
Arst1g02952 641 FunFam Putative LRR receptor-like serine/threonine-protein kinase 23 205 - -
Arst1g02952 641 MobiDBLite consensus disorder prediction 576 599 - -
Arst1g02952 641 Gene3D Transferase(Phosphotransferase) domain 1 369 580 - -
Arst1g02952 641 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Arst1g02952 641 SMART serkin_6 292 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst1g02952 641 Pfam Leucine rich repeat 114 174 IPR001611 GO:0005515
Arst1g02952 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672|GO:0006468
Arst1g02952 641 SUPERFAMILY L domain-like 23 188 - -
Arst1g02952 641 SUPERFAMILY Protein kinase-like (PK-like) 274 562 IPR011009 -
Arst1g02952 641 Gene3D Ribonuclease Inhibitor 23 205 IPR032675 -
Arst1g02952 641 Gene3D Phosphorylase Kinase; domain 1 263 368 - -
Arst1g02952 641 PRINTS Leucine-rich repeat signature 161 174 - -
Arst1g02952 641 PRINTS Leucine-rich repeat signature 116 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g02952 Arst-Chr1 91301361 91306442 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g02952 24 641 Receptor kinase-like Gene Family AT5G16000 64.809 0.0 788
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Arst1g02952 Pkinase 1.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g02952 - - gmx:100775565 1053.12