Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g02840 ATGGAGTGGGACAGCAACTCGGATCTGAGCGGGGAGGAGGAAGAGGAGGGAGCGTTCGACTTCACCCACGCCGACGCCGATGATTGCCCTCTCCCGTTTCCCGTCGAGAACCTTCTTCTGCAGACGGCGCCATGCGGAGTCGTCGTCACCGACGCACTCGAGCCTGACCACCCTATTATCTACGTCAACACCGTCTTTGAGATCGTCACCGGTTACCGCGCCGAGGAGGTTCTCGGTCGCAATTGCCGCTTCTTGCAATGTCGAGGTCCATTTGCCAAGAGAAGGCATCCATTGGTGGAATCAACAGTAATTTCAGAAATTAGAAGATGCCTTGAGGAGGGGATCGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTGATGAACAGATTGCGGCTGACGCCTATATATGGAGATGATGAGACTATAACACATGTAATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTAGGTCCTCTTCACGGTTCTTCACTTAAAGAATCTACTAAGTCATCTGATCGATTTCATTCTGTGCCTTCCTCTTTTCATCCTCTTCCACCAGGAGAGCGAAATGTATCGCGTGGAGTGTGTGGGATATTCCAGTTGAGTGATGAGGTACTGTCTCTGAAGATACTTGCTTGTTTAACTCCAAGAGATATTGCATCAGTTAGCTCTGTCTGTAGGAGATTGTATGAGCTGACAAAAAATGAAGACCTTTGGAGAATGGTGTGCCAAAATGCATGGGGCAGTGAGACTACACGTGTTTTAGAGACTGTGCCTGGTGCGAGGAGGCTTGGATGGGGTCGGTTGGCAAGGGAATTGACCACCCTTGAAGCAGCAGCATGGAGGAAGTTGACTGTTGGAGGTGCTGTTGAACCCTCACGCTGTAATTTCAGTGCTTGTGCTGTGGGCAATAGAGTAGTCCTGTTTGGTGGTGAAGGAGTTAACATGCAGCCTATGAATGACACCTTTGTATTGGATCTCAATTCTAATAATCCCGAGTGGCAACACGTCCAGGTAAGCTCTCCTCCTCCTGGTCGATGGGGCCACACCATTTCTTGTGTCAATGGTTCTAATTTGGTTGTATTTGGAGGATGTGGAAGGCAGGGCCTGCTCAACGATGTGTTTGTTCTGGACCTGGACGCAAAGCCTCCAACTTGGCGTGAAATTTCTGGATTGGCACCGCCCCTTCCAAGGTCGTGGCATAGCTCCTGTACTCTTGATGGTACTAAGTTGATTGTTTCTGGAGGCTGTGCAGACTCTGGAGTGTTATTGAGTGATACTTTCCTCCTTGATTTGTCCATGGAGAAGCCTGTCTGGAGAGAGATACCAATGGCATGGACTCCACCTTCTCGACTGGGCCACACATTGTCTGTTTATGGTGGTAGGAAAATACTAATGTTTGGAGGTCTGGCTAAGAGCGGACCCTTACGTTTTCGTTCCAGTGATGTATTCACTATGGATCTAAGTGAGGAGGAGCCTTGTTGGAGATGTGTAACAGGGAGTGGAATGCCTGGTGCTGGAAATCCCGGGGGCATAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTCAGTCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCAGGTCTTCATTCTGCCTCCCAGCTTTATATTCTTGACCCAACCGATGAGAAGCCCACATGGAGGATTCTAAACGTACCTGGTCGCCCTCCGAGATTTGCTTGGGGACACAGTACATGCGTTGTTGGAGGGACAAGAGCTATTGTATTGGGTGGTCAAACCGGGGAGGAATGGATGCTAAGTGAGCTCCATGAACTTTCGCTTGCGAGTTCTGTCCTATAG 1854 0.493 MEWDSNSDLSGEEEEEGAFDFTHADADDCPLPFPVENLLLQTAPCGVVVTDALEPDHPIIYVNTVFEIVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVESTVISEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLTPIYGDDETITHVIGIQFFTEANIDLGPLHGSSLKESTKSSDRFHSVPSSFHPLPPGERNVSRGVCGIFQLSDEVLSLKILACLTPRDIASVSSVCRRLYELTKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSNNPEWQHVQVSSPPPGRWGHTISCVNGSNLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPMAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVL 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g02840 617 CDD F-box_AtADO-like 204 250 - -
Arst1g02840 617 Gene3D PAS domain 29 165 - -
Arst1g02840 617 NCBIfam PAS domain S-box protein 40 153 IPR000014 -
Arst1g02840 617 SUPERFAMILY F-box domain 194 266 IPR036047 GO:0005515
Arst1g02840 617 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 34 614 - -
Arst1g02840 617 Pfam Galactose oxidase, central domain 365 412 - -
Arst1g02840 617 CDD PAS 43 153 IPR000014 -
Arst1g02840 617 Pfam Galactose oxidase, central domain 301 351 - -
Arst1g02840 617 Pfam Kelch motif 458 509 IPR011498 GO:0005515
Arst1g02840 617 Pfam Kelch motif 525 572 IPR011498 GO:0005515
Arst1g02840 617 SUPERFAMILY Galactose oxidase, central domain 288 602 IPR011043 -
Arst1g02840 617 FunFam Putative LOV domain-containing protein 278 482 - -
Arst1g02840 617 FunFam Adagio protein 1 33 165 - -
Arst1g02840 617 Pfam PAS domain 45 154 IPR000014 -
Arst1g02840 617 Gene3D - 482 615 IPR015915 GO:0005515
Arst1g02840 617 Gene3D - 279 481 IPR015915 GO:0005515
Arst1g02840 617 FunFam Adagio protein 1 202 249 - -
Arst1g02840 617 SUPERFAMILY PYP-like sensor domain (PAS domain) 43 154 IPR035965 -
Arst1g02840 617 Gene3D - 202 249 - -
Arst1g02840 617 Pfam F-box-like 213 251 IPR001810 GO:0005515
Arst1g02840 617 FunFam Putative LOV domain-containing protein 483 616 - -
Arst1g02840 617 ProSiteProfiles PAS repeat profile. 39 114 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g02840 Arst-Chr1 90201137 90205332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g02840 40 155 AGC Kinase Gene Family AT5G58140 31.034 8.87e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g02840 K12115 - gmx:100301887 1126.69