Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g02794 ATGGATCAGAATTTTGATTCAGTGAAAGACCTTTCTCTCAATTCAGAGAAGAACTGGTGCATTAAAGTGAGAATTTTGCGGATGTGGAAGGTTCCGGCATATGAAAAGAGTTATTCGCAACCTTCAATTGAATTGGTTGTAATTGACAAAGACGGAACTCGGATCCATTGTTTCATCCGGGCTGTCCATTACCGGCTTTTTGAACCTATCCTTGAGGAGGGAAAGGTGTTTGTTGTGGGCAACTTTGCAATGGACTCAAACACACAGAAATACAGACCCACCAAGCATAGCATGCGGATCATATTTAAGAGGGACACATTGGTCTCTGGTGTTGATGACATGGACATTCCAATTGAATCATTTGATTTCGTGGCAACCAAGGAAATCTTATCATCCGTTAGGGATGACTTACATCTTATAAGTATGCACTCTCATGTTGTCATTATTGTTGGTTTGCTGTCCGCAAAGAGTGAGTTGATTCCTTTTCAAAATAGAAATCGGAAGTCACATTATATGAAAATCGAGCTTGATGATCTGAGTGGCAGCGAGCGGCTTTCATGCACCTTGTGGGAAAATTATGCGTCTGATTTGGTTAATTTTCTTGATGCCAACGAGGCCACCAAATTTATAATTGTGCTCCAATTTGCCAAGATGAAGTTCTACAATGGTGTTATGACTATAACCAACACAAACTACACCACAAGACTCATGGTTAATGCTGACCTTGAAGTGGTTAAGAAATTCCGCAAAAGGCTGATTCGACTTGGTAGCAAGCACAGCACCAGCGTTGAGGTTATTGGCCAGGTAGTGAGGCATTCTCCATCTGAAGATTTTCTCAGCCTTACCCCATATGCCACCATACATCAAATAAAGGAAACTCTTGAGAAATCAACCTTTGTGACATGTGGAACCATCACTGACATTGACAGAGATCATGCATGGTGGTACAAGGCTTGCAGGCATTGCACACAAGGACTGGAGGCACTTACTGACCAATTTTATTGTCCAAAATGCGATGTTTACTCCTCAGTTTTTGCCCCCAGGTTAGTAGTCCCTCATGCGGTGTTGGTTCGTGTTGGTGACGACTCAGATACCGCAACTTTTGTGCTATTTGAGAATTGTGCGGTAAAGTTCTTAGGACTATCTGCCGCTGAGATCCGCACTAGGCTTCTTGCTAGGGTAATTTGTCCTTACTTTGTTTACTGGAAATTTGTGATATATTTTGCTGCCAACTTAATGGCTTCTTCTCTTCAACAACCAGGGATATGGAAGAGACCATTCCCCAGATAA 1290 0.4217 MDQNFDSVKDLSLNSEKNWCIKVRILRMWKVPAYEKSYSQPSIELVVIDKDGTRIHCFIRAVHYRLFEPILEEGKVFVVGNFAMDSNTQKYRPTKHSMRIIFKRDTLVSGVDDMDIPIESFDFVATKEILSSVRDDLHLISMHSHVVIIVGLLSAKSELIPFQNRNRKSHYMKIELDDLSGSERLSCTLWENYASDLVNFLDANEATKFIIVLQFAKMKFYNGVMTITNTNYTTRLMVNADLEVVKKFRKRLIRLGSKHSTSVEVIGQVVRHSPSEDFLSLTPYATIHQIKETLEKSTFVTCGTITDIDRDHAWWYKACRHCTQGLEALTDQFYCPKCDVYSSVFAPRLVVPHAVLVRVGDDSDTATFVLFENCAVKFLGLSAAEIRTRLLARVICPYFVYWKFVIYFAANLMASSLQQPGIWKRPFPR 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g02794 429 Gene3D - 279 393 IPR012340 -
Arst1g02794 429 Pfam Replication factor-A C terminal domain 300 387 IPR013955 -
Arst1g02794 429 SUPERFAMILY Nucleic acid-binding proteins 282 389 IPR012340 -
Arst1g02794 429 SUPERFAMILY Nucleic acid-binding proteins 4 114 IPR012340 -
Arst1g02794 429 Gene3D - 3 110 IPR012340 -
Arst1g02794 429 Pfam Domain of unknown function DUF223 44 114 IPR003871 -
Arst1g02794 429 SUPERFAMILY Nucleic acid-binding proteins 140 241 IPR012340 -
Arst1g02794 429 CDD RPA1_DBD_A_like 20 108 - -
Arst1g02794 429 Gene3D - 114 262 IPR012340 -
Arst1g02794 429 CDD RPA1_DBD_B_like 149 253 - -
Arst1g02794 429 PANTHER OS03G0429900 PROTEIN 16 381 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g02794 Arst-Chr1 89812159 89814354 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g02794 11 386 Core DNA Replication Machinery Family AT5G08020 20.506 6.29e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g02794 - - adu:107458435 868.611