Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g02727 ATGGATGGCGTATTCAACCTCCCTGAAGCCACCAGGAGCGACTTTCTCCGCTCTCTCATGCACACTTTTGGTTGCACATACATATGCCTCTGGCACTGCCACTCATCATCTAATAATTTATTGTTCTTGGATGGGATTTACAATAATGTAAGTAGCACCGTAGCTGAAGAAACGCTTTTTAATCTATATCAGCGTTTAACCTTTGATGCCGCCAATGACGAGTGGGTTCCTGGTGCGGCTTTCAGGAGGCACATGGCCTACTTAGAGCTTCAACAATTGGATCTTCTAAGACTTGCATCCGCCGTTATCCAAACACAATTCTATCTGGAAGCAAGGATTGAGACAGCTATCTTCATGGGGTGCAGCAAAGGGGAAATTGAGCTTGGTTTCTCCACTATCCCTCAAATTGACATGAAAGCAGCAGTGAAGAGTTTATTCCCAGAAGATTTTTCAAGAGAGCAGATTCATCATCCAGCTTCATCGTCTTCATGTTCTTGCCCTAGCGATGAATTCTCATCCTTAGGGGGAGTATTGTTACCCGCACCAGAGGGTGAGCAAGAAGCAATCATAAGAGCAATCCTTCATGTTATTTCTTCTTCTTCTTCACCCGCCACCACTACTTCTCAACCACCACCATATAATAACAGTGCTTTCAGGGCATACCCTTCAACTACTTACAATTTAGTAACAAGTAGCAGCAGAAGGTTTAGTTTAATGAAGAGATCTATAGAATTCTCTAGAACCCTACATTTAATGAGAATTAGAGACCGCTTTCATTTTCAACGTCAACATCAACCGCCTCATCCCCTCATAATTGGTACCCAGAATGCTAATAATAATAAGCATCTTCATCACATCATATTAGAGAGAAGAAGACGCGAGAACGAAAACAAGTGTTTCCGGGAACTTAGGGCATTACTTCCTCCAGGAACTAAGAAACACAAATCTTCGGTTCTTATAGCGGCAAAGGAGGCATTGAAGTCTTTAATTGCTGAAATTGAAAAGCTTAACATAAGAAACCAGCAGTTAAAAACACTACTTGGTTCATCATCATCAAGCTATGGAAATGTTCATATCTCCTCATCACCATCATCATCAAATGAGAGATTGAACGTTGCGGTGTCGCATAACCTCAGCTTCGTTTCCATGGCCGCAAATACTACTACTAATACACAAGGCACAACCATCACCCAAATCATCTTCAGAATAAGGATTCTTCAGGGAAGTGAATGGGACGAGTCTGGCTTCGTGGAAGCAGTGAGAAGAGTTGTGTCTAACTTACCTTAA 1287 0.4211 MDGVFNLPEATRSDFLRSLMHTFGCTYICLWHCHSSSNNLLFLDGIYNNVSSTVAEETLFNLYQRLTFDAANDEWVPGAAFRRHMAYLELQQLDLLRLASAVIQTQFYLEARIETAIFMGCSKGEIELGFSTIPQIDMKAAVKSLFPEDFSREQIHHPASSSSCSCPSDEFSSLGGVLLPAPEGEQEAIIRAILHVISSSSSPATTTSQPPPYNNSAFRAYPSTTYNLVTSSSRRFSLMKRSIEFSRTLHLMRIRDRFHFQRQHQPPHPLIIGTQNANNNKHLHHIILERRRRENENKCFRELRALLPPGTKKHKSSVLIAAKEALKSLIAEIEKLNIRNQQLKTLLGSSSSSYGNVHISSSPSSSNERLNVAVSHNLSFVSMAANTTTNTQGTTITQIIFRIRILQGSEWDESGFVEAVRRVVSNLP 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g02727 428 Gene3D - 277 352 IPR036638 GO:0046983
Arst1g02727 428 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 280 329 IPR011598 GO:0046983
Arst1g02727 428 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 278 345 IPR036638 GO:0046983
Arst1g02727 428 Coils Coil 319 346 - -
Arst1g02727 428 CDD bHLH_AtbHLH_like 285 336 IPR045239 -
Arst1g02727 428 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 103 426 IPR044658 -
Arst1g02727 428 Pfam Helix-loop-helix DNA-binding domain 283 329 IPR011598 GO:0046983
Arst1g02727 428 SMART finulus 286 335 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g02727 Arst-Chr1 89081880 89085345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g02727 1 427 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 32.957 2.59e-57 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst1g02727 HLH 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g02727 - - ahf:112776694 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g02727 1 89081880 89085345 Arst1g02727 1 89081880 89085345 ECH
Arst1g02727 1 89081880 89085345 Arst3g02726 3 41246580 41252211 PCT