Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g02628 ATGCAGCAACACAGGTTGAGACAGCATGCTATGATGCAGCACTCTCTCTACCACCACCCTGCTCTCCTAACTCCTCCACAGATTGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCAAGTTCATGCCGCAGTGTCTATGTTGGCAACATTCATCCTCAGGTTTCAGAATCCCTTCTTCAAGAGCTTTTTTCAAGTGCAGGCGCACTTGAAGGATGCAAGCTCATTAGGAAAGATAAGTCGTCCTATGGCTTTGTTGATTACTTTGATCGCAGTGCAGCTGCATTTGCAATTGTAACTCTCAACGGAAGGCACATCTTTGGCCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACTTCAGGTCATTTTAATATTTTTGTTGGTGACCTTAGCCCTGAGGTTACAGATGCAACCTTGTTTGCTTGCTTCTCTGTGTATCCCACTTGTTCAGATGCGAAGGTAATGTGGGATCAGAAAACAGGGCGGTCCAGGGGATTTGGCTTTGTTTCTTTTCGAAATCAGCAGGATGCCCAAAGTGCCATAAATGATTTAACTGGTAAGTGGCTTGGAAGTAGACAGATACGTTGTAACTGGGCCACTAAAGGGGCTAACAGCAATGATGAAAAGCAGAGTTCGGATTCTAAAAGTGTTGTGGAGTTAACTAATGGAACATCGGAAGAAGCGCAGCAAGTAACCAGTGATGATGCACCAGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTCGCTCCAGAGGTTACATCTGTTGATCTTCATCACCATTTTCATGCCCTTGGTGTTGGAATTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGATTTGTGAGATACAGTACACATGATGAAGCAGCTCTTGCTATCCAGATGGGTAATGCTCGGATTCTGTTTGGCAAACCTGTCAAGTGTTCATGGGGTAGCAAGCCCACTCCTCCTGGAACAGCCTCTACTCCTCTTCCCCTACCTAGTACTGCACATGTGCCTGGCTTTTCTCCTGTGGGACTTGCAGCGTATGAACGTCAAATGGCTCTGAGCAAGATGGGTGGTGCGCATGCGGCGCTTATGCATCAGCAGAATCAGCATGCTGCCATGAAGCAGGCAGCCATGGGAATGGGTGCTCCTAACCAGCACCTTATGTACTATCAGTAA 1203 0.4638 MQQHRLRQHAMMQHSLYHHPALLTPPQIEPILSGNLPPGFDSSSCRSVYVGNIHPQVSESLLQELFSSAGALEGCKLIRKDKSSYGFVDYFDRSAAAFAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPTCSDAKVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGANSNDEKQSSDSKSVVELTNGTSEEAQQVTSDDAPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGIIEDVRVQRDKGFGFVRYSTHDEAALAIQMGNARILFGKPVKCSWGSKPTPPGTASTPLPLPSTAHVPGFSPVGLAAYERQMALSKMGGAHAALMHQQNQHAAMKQAAMGMGAPNQHLMYYQ 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g02628 400 Gene3D - 126 224 IPR012677 -
Arst1g02628 400 FunFam Oligouridylate-binding protein 1C 229 330 - -
Arst1g02628 400 SMART rrm1_1 132 205 IPR000504 GO:0003723
Arst1g02628 400 SMART rrm1_1 253 322 IPR000504 GO:0003723
Arst1g02628 400 SMART rrm1_1 47 116 IPR000504 GO:0003723
Arst1g02628 400 SUPERFAMILY RNA-binding domain, RBD 241 330 IPR035979 GO:0003676
Arst1g02628 400 SMART rrm2_1 47 116 IPR003954 GO:0003676
Arst1g02628 400 SMART rrm2_1 132 205 IPR003954 GO:0003676
Arst1g02628 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Arst1g02628 400 CDD RRM2_PUB1 130 209 - -
Arst1g02628 400 MobiDBLite consensus disorder prediction 209 250 - -
Arst1g02628 400 FunFam oligouridylate-binding protein 1-like isoform X2 129 224 - -
Arst1g02628 400 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 43 329 - -
Arst1g02628 400 SUPERFAMILY RNA-binding domain, RBD 45 211 IPR035979 GO:0003676
Arst1g02628 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 319 IPR000504 GO:0003723
Arst1g02628 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Arst1g02628 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Arst1g02628 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 326 IPR000504 GO:0003723
Arst1g02628 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Arst1g02628 400 Gene3D - 39 125 IPR012677 -
Arst1g02628 400 Gene3D - 229 330 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g02628 Arst-Chr1 88166218 88170291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g02628 42 320 Eukaryotic Initiation Factors Gene Family AT3G16380 26.351 1.03e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g02628 K13201 - gmx:100813736 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g02628 1 88166218 88170291 Arst1g02628 1 88166218 88170291 ECH